DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and kin-34

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_503162.3 Gene:kin-34 / 178552 WormBaseID:WBGene00019815 Length:311 Species:Caenorhabditis elegans


Alignment Length:287 Identity:94/287 - (32%)
Similarity:149/287 - (51%) Gaps:37/287 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LGTGTFGKVK-IGEHQITRVKVAVK--ILNRQKIKSLDVVGKIRREIQ-NLKLFRHPHIIKLYQV 94
            ||.|:||:|. :...:...:..|:|  ::..|..:.:|.   ||:||. ...|..|.::|   ||
 Worm    31 LGQGSFGQVALVSNRRYPEMLAALKRIVITGQDREYIDA---IRKEITIQESLTGHENVI---QV 89

  Fly    95 ISTPSD---IFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPEN 156
            :...||   .:|.:||..||:|::.|.........:|..:|:|:::|:.:.|...:.|||:||||
 Worm    90 LGKESDAQFCYMFLEYADGGDLYEKITSGCSFSLEEAHSYFKQLVNGLKFLHCRDVAHRDIKPEN 154

  Fly   157 LLLDHNMHVKIADFGLSN--MMLDGEFL-RTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYA 218
            |:|.|:.|:|||||||:.  .....|.: ...|||..|.|||:.:|..|.||::||||.||:|.|
 Worm   155 LMLTHSGHLKIADFGLATWYRYKGAELIFEQRCGSVEYVAPEIYTGAQYRGPQIDIWSAGVVLLA 219

  Fly   219 LLCGTLPFDDEHVPTLFRK-----IKSGIFPIPEY--LNKQVVNLVCQMLQVDPLKRANIEEIKK 276
            :|...||::   .|.:..|     :|:.:..|..:  |:.:...|:.:||......||.||||:.
 Worm   220 MLTRQLPWE---FPCMTNKRYFFWMKNRVAHIDAWNELSCRAKKLLWKMLSPGSENRATIEEIQS 281

  Fly   277 HEWFQKDLPAYLF----PSSIEQDSNV 299
            ..|       |||    ...::.|.|:
 Worm   282 SAW-------Y
LFGDVENDEVDDDDNL 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 88/262 (34%)
UBA_AID_AMPKalpha 297..360 CDD:270521 1/3 (33%)
AMPKA_C 457..580 CDD:213378
kin-34NP_503162.3 Protein Kinases, catalytic domain 24..285 CDD:473864 89/269 (33%)
Blue background indicates that the domain is not in the aligned region.

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