DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and txt-2

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_872128.2 Gene:txt-2 / 178551 WormBaseID:WBGene00019817 Length:328 Species:Caenorhabditis elegans


Alignment Length:268 Identity:94/268 - (35%)
Similarity:151/268 - (56%) Gaps:32/268 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGK-------IRREI---QNLKLFRHPHI 88
            ||.|:|.:|.:    :.:|....|:.   .:|.:.:|||       |:||.   :.|...||.::
 Worm    28 LGEGSFAEVVL----VAKVGTPNKMF---AMKEISIVGKDECFMESIKRECSIQKRLSKSRHLNM 85

  Fly    89 IKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLK 153
            |.|:::.:.|.:..:|:.|..||:||:.|.:||.|...:|.|:|:|:|.|:.:.|...:.|||:|
 Worm    86 IHLFEIRTNPENYQLILSYADGGDLFEKINQHGGLGSDEAHRYFKQLIDGLRFIHEEGVTHRDIK 150

  Fly   154 PENLLLDHNMHVKIADFGLSNM-MLDG--EFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVI 215
            ||||||..:..:||||||.:.| ..:|  :.|...||||.|.||||::|..|.||.|||||.||:
 Worm   151 PENLLLTKSGILKIADFGFATMHRFNGAEQMLNAYCGSPPYIAPEVLTGIDYRGPAVDIWSAGVV 215

  Fly   216 LYALLCGTLPFDDEHVPTLF--------RKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIE 272
            |.|::.|.:|::......:|        |..:.|.:   ..:::||::|:.::|....| ||.|.
 Worm   216 LIAMIAGAVPWEQADHFDIFQSRYCSFRRNGRKGAW---SRMSQQVISLLRKILLQAEL-RATIS 276

  Fly   273 EIKKHEWF 280
            .|::..||
 Worm   277 MIEEDPWF 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 92/266 (35%)
UBA_AID_AMPKalpha 297..360 CDD:270521
AMPKA_C 457..580 CDD:213378
txt-2NP_872128.2 Protein Kinases, catalytic domain 22..284 CDD:473864 92/266 (35%)
Blue background indicates that the domain is not in the aligned region.

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