DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and kin-33

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001367716.1 Gene:kin-33 / 178549 WormBaseID:WBGene00017083 Length:337 Species:Caenorhabditis elegans


Alignment Length:311 Identity:108/311 - (34%)
Similarity:144/311 - (46%) Gaps:73/311 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AAGSANGQPLVKIGHYLLGATLGTGTFGKVKI-------------------GEH--QITRVKVAV 56
            |..|....|......|.:...||.||||||.:                   |||  |||      
 Worm     3 ATESTTTTPPASTEKYQVLGLLGKGTFGKVLLIELESLPGEAVAMKEIEASGEHVEQIT------ 61

  Fly    57 KILNRQK----IKSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYI 117
              ||.:|    .|.|...|             |.::|:...:.:.|...|:||||..||:|||.|
 Worm    62 --LNVKKEYILTKRLSAPG-------------HENVIRFLSIRTMPEHYFLIMEYADGGDLFDKI 111

  Fly   118 VKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNM-MLDGE- 180
            ....:|...||..:|:|:|:|:.|.|...:.|||:|||||:|.....:||.||||..: ::.|| 
 Worm   112 SSEYRLTSSQAHGYFKQLIAGLRYIHSKGVTHRDIKPENLMLTKAGVLKITDFGLGTLHIIKGEE 176

  Fly   181 -FLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCGTLP--------------FDDEH 230
             .:.|.||:|.||||||:.|..|.||.|||||.||:|..:|.|..|              |:||.
 Worm   177 SLMDTRCGTPQYAAPEVLVGNQYRGPPVDIWSAGVVLINMLTGHSPWKKACKSDASYTRWFNDEC 241

  Fly   231 VPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQ 281
            ..   |...|.       |..:|:.|:|.:|..:|..||.||.|::..|||
 Worm   242 TE---RDAWSD-------LGARVITLLCSILAHNPTHRAPIELIEQDHWFQ 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 102/296 (34%)
UBA_AID_AMPKalpha 297..360 CDD:270521
AMPKA_C 457..580 CDD:213378
kin-33NP_001367716.1 PKc_like 16..281 CDD:419665 102/295 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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