DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and prk-1

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001263706.1 Gene:prk-1 / 175980 WormBaseID:WBGene00004182 Length:589 Species:Caenorhabditis elegans


Alignment Length:536 Identity:119/536 - (22%)
Similarity:194/536 - (36%) Gaps:173/536 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LGTGTFGKV-KIGEHQITRVKVAVKILNRQKIKSLDVVGK--IRREIQNLKLFRH-PHIIKLYQV 94
            :|.|.||.| :....|..:..||||.:..:.::|..:..:  |..|:.:|:.... |.:||:...
 Worm    63 IGRGGFGIVYEATTRQDGQQPVAVKFVQHKHVRSWTMTCRQLIPSEVCHLETCEDIPGVIKILDW 127

  Fly    95 ISTPSDIFMIMEYVSG-GELFDYIVKHGKLQEHQARRFFQQIISGV-DYCHRHMIVHRDLKPENL 157
            .:......::||..:. .:|||.:..||.|.|...:..|:|:|:.| :...:|.::|||:|.|||
 Worm   128 FANSKGFLIVMERPANCMDLFDMVSVHGPLNEDMGKFIFKQVITTVFNMYSKHGLLHRDIKDENL 192

  Fly   158 LLDHNM-HVKIADFG---LSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYA 218
            :::.|. .||:.|||   .:......||.    |:.:|..||....:||...|...||.||:|:.
 Worm   193 IVNMNTGEVKLVDFGATAYAEKATKKEFQ----GTRSYCPPEWFRDQLYLPLEATSWSLGVLLFI 253

  Fly   219 LLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKD 283
            ||.|.|||.:|      .:|..|....|..|:|:|..||...|......||::.:|..|.|.:.|
 Worm   254 LLTGKLPFRNE------IQICLGNVKFPPDLSKEVCQLVKSCLTTSTSARASLAQIAAHPWMETD 312

  Fly   284 LPAY----LFPSSI----------------EQDSNVIDTYAVA------------EVCT------ 310
            .|.:    .|..::                |:|:::.|...:.            .:||      
 Worm   313 KPFFGGDLTFEEALMEIKNPPVVIEDKEAEEEDNDLNDVVILTRSRESRTDLDAESICTMVTAVE 377

  Fly   311 -----KFGVKETEVHN-----------------------------SLLSGDPHDQL--------- 332
                 ...|||.|...                             ||:|....||.         
 Worm   378 DRYEPSIAVKELEQEEIVETGETTNLMRSESRYDNISSSSFCDYVSLVSSSYDDQFTSTSDIYQS 442

  Fly   333 -----------------------AIAYHLIIDNKRFA-----DDAANQINEINNFFVAGSPPPPP 369
                                   |.||:|:...|:.:     |...:.::|.::           
 Worm   443 ACEVFPHTGSSSSLSRSMGAVKSASAYNLVRMRKKSSIFKSFDTELDPVSENDH----------- 496

  Fly   370 PPPVPQSSM---------DHQAPLATVTVGGGTSASSGTATPVPPVAGGTPSSTIPIRPHP---- 421
            .|.:|::|.         |....::...|        ..|.|:||          |:.|..    
 Worm   497 QPLIPETSSATCQSTYSNDEDVTISEKVV--------SPAQPLPP----------PLSPRKGSLQ 543

  Fly   422 --ERIAPMRDRQLAMS 435
              |.:...||..:.||
 Worm   544 CFESVPRSRDSVIRMS 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 78/255 (31%)
UBA_AID_AMPKalpha 297..360 CDD:270521 19/151 (13%)
AMPKA_C 457..580 CDD:213378
prk-1NP_001263706.1 STKc_PIM 56..309 CDD:270907 78/255 (31%)
Blue background indicates that the domain is not in the aligned region.

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