DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and Snrk

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_620188.1 Gene:Snrk / 170837 RGDID:69653 Length:746 Species:Rattus norvegicus


Alignment Length:448 Identity:148/448 - (33%)
Similarity:226/448 - (50%) Gaps:50/448 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQ 78
            ||...|......|.|.|..|||.|.|..||:..|..|..|||||::::.|:.:| ..|.:.:|::
  Rat     2 AGFKRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTL-ATGHLFQEVR 65

  Fly    79 NLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGK-LQEHQARRFFQQIISGVDYC 142
            .:||.:||:|::||:||.|.:.:::|:|...||::||||:||.: |.|..|:::|.||:..:.||
  Rat    66 CMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDMFDYIMKHEEGLNEDLAKKYFAQIVHAISYC 130

  Fly   143 HRHMIVHRDLKPENLL-LDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPE 206
            |:..:|||||||||:: .:....||:.|||.||....|:.|.|||||..|:|||::.|..|..|.
  Rat   131 HKLHVVHRDLKPENVVFFEKQGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPA 195

  Fly   207 VDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANI 271
            |||||.||||:.|:||..||.:.:.......|....:.:|..::....:|:.:|||.||.:||::
  Rat   196 VDIWSLGVILFMLVCGQPPFQEANDSETLTMIMDCKYTVPPRVSAGCRDLITRMLQRDPKRRASL 260

  Fly   272 EEIKKHEWFQKDLPA----YLFP------SSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSG 326
            |||:.|.|.|...|:    |..|      .|.|:.:::|....:.::..:..:.|.      |..
  Rat   261 EEIESHPWLQGVDPSPATKYNIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEA------LET 319

  Fly   327 DPHDQLAIAYHLIID-------NKRFADDAANQINEINNFFVAGSPPPPPPPPVPQSSMDH--QA 382
            :.::.:...|.|:.:       .|.....:|:..|....|..:.    |....|||...|.  ..
  Rat   320 NRYNHITATYFLLAERILREKQEKEIQTRSASPSNIKAQFRQSW----PTKIDVPQDLEDDLTAT 380

  Fly   383 PLATVTV-----GGGTSA-----SSGTATPVP----PVAGGTPSSTIPIRPHPERIAP 426
            ||:..||     ..|.|.     |.|...|..    |...|...||:|    |..:.|
  Rat   381 PLSHATVPQSPARAGDSVLNGHRSKGLCDPAKKDELPELAGPALSTVP----PASLKP 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 108/256 (42%)
UBA_AID_AMPKalpha 297..360 CDD:270521 8/69 (12%)
AMPKA_C 457..580 CDD:213378
SnrkNP_620188.1 STKc_SNRK 12..269 CDD:270976 108/257 (42%)
UBA_SNRK 288..335 CDD:270524 7/52 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 383..414 7/30 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 494..638
Blue background indicates that the domain is not in the aligned region.

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