DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AMPKalpha and Gm4513

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001311480.1 Gene:Gm4513 / 101055864 MGIID:3782698 Length:301 Species:Mus musculus


Alignment Length:268 Identity:106/268 - (39%)
Similarity:154/268 - (57%) Gaps:5/268 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 HYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKL 91
            :|.:..|||.|.|..||...|..|...||||||...|    :....|.||.:.:|...||:||||
Mouse    26 NYKMLNTLGEGKFSVVKRAFHVPTSTSVAVKILQNTK----EYTSPICREARIMKSLSHPNIIKL 86

  Fly    92 YQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPEN 156
            :.|:......:::|||.|.|||.|.|:|.|.|:|.:.||.|.||:..|.|||.|.|||||:|..|
Mouse    87 FHVVQRREITYLVMEYASEGELQDRIIKVGSLEESETRRLFAQIVHAVQYCHDHHIVHRDIKASN 151

  Fly   157 LLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLC 221
            :|:|...:.|:.||||:..::.|:.|...||:..|.|||::....|.||.|||||.||:|:.:|.
Mouse   152 ILIDCRGNAKLCDFGLAAEVIPGQKLAGFCGTLPYCAPELLQAVKYEGPPVDIWSLGVLLFLMLS 216

  Fly   222 GTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPA 286
            |.|||.......|.::|.|..|.||.:::..:.|::.::|.::|.:|..|.:|.:|... :...|
Mouse   217 GNLPFQGRSFVDLKQEIISANFSIPSHVSIDISNVIIELLMINPSRRPTIHQIMRHPMI-RGSEA 280

  Fly   287 YLFPSSIE 294
            .|.|:|.:
Mouse   281 CLPPTSTQ 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 102/252 (40%)
UBA_AID_AMPKalpha 297..360 CDD:270521
AMPKA_C 457..580 CDD:213378
Gm4513NP_001311480.1 STKc_AMPK-like 26..273 CDD:270905 101/250 (40%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.