DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and LOC100911229

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_038951080.1 Gene:LOC100911229 / 100911229 RGDID:6494469 Length:654 Species:Rattus norvegicus


Alignment Length:594 Identity:163/594 - (27%)
Similarity:260/594 - (43%) Gaps:121/594 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 HYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKL 91
            ||.:.|:||.|.||:||:..|.:|:.|||:|:|.:.....|     ::.||:.:|...|||||||
  Rat    23 HYRILASLGQGGFGEVKLASHLLTQTKVAIKVLPKSNKNLL-----LKSEIEIMKSLDHPHIIKL 82

  Fly    92 YQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPEN 156
            ..:|.|..:||:::|:..||||...|...|.|.|.:..|.|:|::..:.|||:..|:|||:||||
  Rat    83 LHIIDTNENIFIVLEHAVGGELLTRIEDFGYLPEEECNRLFRQMVLALQYCHQRGIIHRDIKPEN 147

  Fly   157 LLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLC 221
            :||||..:||::|||||..::.|:.|.|.||:..|.|||:.:...|.|..:|:||.||:||.:..
  Rat   148 ILLDHKGNVKLSDFGLSTKIVMGQKLTTLCGTLPYCAPELFNLNGYDGQAIDVWSLGVVLYYMAT 212

  Fly   222 GTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPA 286
            |.|||.......:.:||.||.:.:...|:..:.:::.::|.|:|.:|..:.||.:..|.:.:  .
  Rat   213 GCLPFQGFTYQAIKQKILSGRYSVNFRLSPDLWDVIAKLLTVNPRERPRVHEILRFNWLKNE--N 275

  Fly   287 YLFPSSI--EQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSGDPHDQLAIAYHLIIDNKRFADD- 348
            .:.|||:  ..||:...|..|  :....|.::.::..||.. ...||: :|.:|::..|..::| 
  Rat   276 EVSPSSLGGNTDSHPDPTILV--MMGDMGYEQGQIRESLRE-RKFDQV-MATYLMLREKACSEDK 336

  Fly   349 ---------------AANQINEINNFFVAGSPPPP-----PPPPV------PQSSMDHQAPLATV 387
                           :.....|.......||..|.     .|..:      .:::|.|..|....
  Rat   337 SIKTPHPTQCAQTLKSTGSTTEKQTTLRRGSSLPTLTTFYLPSKLESLNKEKRTTMRHTMPPNLN 401

  Fly   388 TVGGGTSASSGTATPVPPVAGGT-----------------------PSSTIPIRPHPERIAPMRD 429
            ......|.:.|..|.|......|                       |..|.|:|    ||.|...
  Rat   402 CFNKSESLNKGRRTIVSHTISPTLNCFNKPESLNKGKRTIVRHTMPPKKTSPVR----RICPRLH 462

  Fly   430 RQLAMSVQTSGGGAFPEKTARGGTPIKRAKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINPY 494
            :...|       |:..|.:::              |:.|.|:..:......|.|..|.    :.|
  Rat   463 KSFGM-------GSASEDSSK--------------RNSSDPSLTIFSSQSFMSAFKYG----STY 502

  Fly   495 HVRVRRQNVKTGKFSKMSLQLYQVDAKSYLLDFKSLTNDEVEQGDDVIMES----LTPPPLSVSG 555
            ..|            |..||.        :|.:.:  :.|.:|....|:.|    .|.||   :.
  Rat   503 SKR------------KAFLQC--------ILHYHA--SQEEDQYKTTIIPSGKLNTTVPP---NS 542

  Fly   556 VMPLQPTGH 564
            :...|||||
  Rat   543 LQEDQPTGH 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 99/252 (39%)
UBA_AID_AMPKalpha 297..360 CDD:270521 13/78 (17%)
AMPKA_C 457..580 CDD:213378 24/112 (21%)
LOC100911229XP_038951080.1 STKc_AMPK-like 23..270 CDD:270905 99/251 (39%)
UBA_MARK_Par1 290..329 CDD:270522 9/42 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24343
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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