DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and mark1

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_002936069.2 Gene:mark1 / 100490022 XenbaseID:XB-GENE-962867 Length:792 Species:Xenopus tropicalis


Alignment Length:651 Identity:189/651 - (29%)
Similarity:307/651 - (47%) Gaps:150/651 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPQMRAAAAEAV------AAGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKIL 59
            :|..::::.:::      .|.:.:.||  .||:|.|..|:|.|.|.|||:..|.:|..:|||||:
 Frog    29 VPPTKSSSRQSLPRCRNSIASTTDEQP--HIGNYRLLKTIGKGNFAKVKLARHVLTGREVAVKII 91

  Fly    60 NRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGKLQ 124
            ::.::.... :.|:.||::.:|:..||:|:||::||.|...:::||||.||||:|||:|.||:::
 Frog    92 DKTQLNPTS-LQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMK 155

  Fly   125 EHQARRFFQQIISGVDYCHRHMIVHRDLKPENLLLDHNMHVKIADFGLSNMMLDGEFLRTSCGSP 189
            |.:||..|:||:|.|.|||:..|||||||.||||||.:|::||||||.||....|..|.|.||||
 Frog   156 EKEARAKFRQIVSAVQYCHQKCIVHRDLKAENLLLDADMNIKIADFGFSNEFTIGNKLDTFCGSP 220

  Fly   190 NYAAPEVISGKLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVV 254
            .|||||:..||.|.|||||:||.|||||.|:.|:||||.:::..|..::..|.:.||.|::....
 Frog   221 PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCE 285

  Fly   255 NLVCQMLQVDPLKRANIEEIKKHEWF-----QKDLPAYLFPSSIEQDSNVIDTYAVAEVCTKFGV 314
            ||:.::|.::|:||.::|:|.|..|.     .::|..|..|   |.|.|  ||..: ::....|.
 Frog   286 NLLKKLLVLNPVKRGSLEQIMKDRWMNVGYEDEELKPYTEP---EPDFN--DTKRI-DIMVTMGF 344

  Fly   315 KETEVHNSLLSGDPHDQLAIAYHLIIDNKRFADDAANQI------------NEINNFFVAGSPPP 367
            ...|::|:::: ..:|:: :|.:|::..|....:....:            :::||    .|.|.
 Frog   345 SREEINNAVVN-QKYDEV-MATYLLLGRKPPEFEGTESLSSSNLCPRSRPSSDLNN----SSVPS 403

  Fly   368 PPPPPVPQS---------SMDHQAPLATVTV-----GGGTS------------------------ 394
            |....|.:|         ..||..|....:|     |...|                        
 Frog   404 PAHMKVQRSISANQKQRRFSDHAGPSIPPSVSYTKRGQANSVESEQKEDWDKNGSRKLSSTMVNS 468

  Fly   395 ----------------ASSGTATPVPPVAGGTPSSTIPIRPHPERIAPMRD------RQLAMSVQ 437
                            :|:||:..:.|.:|.|..:|.......:|:..:::      .:::....
 Frog   469 KGEVVASPLAGPERKKSSAGTSNSLFPGSGMTRRNTYVCERTTDRLTAVQNGKDSSLTEMSAGST 533

  Fly   438 TSGGGAFPEKTAR-------GGTPIK--------------------------------------R 457
            ||...|.|....|       .|.|||                                      |
 Frog   534 TSTASAVPSARPRHQKSMSASGHPIKVTLPTIKDGTEGFRPSTGTQRVPATSPSAHSISATTPDR 598

  Fly   458 AKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINPYHVRVR----RQNVKTGKFSKMSLQLYQV 518
            .::..|..|:|..:.   |..|..:..:|.....:|.|...:    |:...||..||::.:..:.
 Frog   599 TRFPRGSTSRSTFHG---EQLRDRRTATYNGPPASPAHETTQFSHSRRGTSTGIISKITSKFARR 660

  Fly   519 D 519
            |
 Frog   661 D 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 124/254 (49%)
UBA_AID_AMPKalpha 297..360 CDD:270521 12/74 (16%)
AMPKA_C 457..580 CDD:213378 15/67 (22%)
mark1XP_002936069.2 STKc_MARK 59..311 CDD:270974 122/252 (48%)
UBA_MARK1 331..371 CDD:270588 9/44 (20%)
MARK1-3_C 693..790 CDD:213381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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