DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMPKalpha and snrk

DIOPT Version :10

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001123824.1 Gene:snrk / 100170575 XenbaseID:XB-GENE-1005804 Length:764 Species:Xenopus tropicalis


Alignment Length:431 Identity:141/431 - (32%)
Similarity:222/431 - (51%) Gaps:60/431 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 AGSANGQPLVKIGHYLLGATLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQ 78
            ||...|......|.|.|..|||.|.|..||:..|..|..|||||::::.|:.|| ..|.:.:|::
 Frog     2 AGFKRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDSL-ATGHLFQEVR 65

  Fly    79 NLKLFRHPHIIKLYQVISTPSDIFMIMEYVSGGELFDYIVKHGK-LQEHQARRFFQQIISGVDYC 142
            .:||.:||:|::||:||.|.:.:::|:|...||:::|||:||.: |.|..|:::|.||:..:.||
 Frog    66 CMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDMYDYIMKHEEGLSEELAKKYFAQIVHAISYC 130

  Fly   143 HRHMIVHRDLKPENLL-LDHNMHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPE 206
            |:..:|||||||||:: .:....||:.|||.||....|:.|.|||||..|:|||::.|..|..|.
 Frog   131 HKLHVVHRDLKPENVVFFEKQGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPA 195

  Fly   207 VDIWSCGVILYALLCGTLPFDDEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANI 271
            |||||.||||:.|:|||.||.:.:.......|....:.:|::::|...:|:.:|||.||.:||::
 Frog   196 VDIWSLGVILFMLVCGTPPFQEANDSETLTMIMDCKYTVPKHVSKDCKDLITRMLQRDPKRRASL 260

  Fly   272 EEIKKHEWFQKDLPA----YLFP------SSIEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSG 326
            |||:.|.|.|...|:    |..|      .|.|:.:::|....:.::..:..:.:.      |..
 Frog   261 EEIENHPWLQGVDPSPATKYNIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVDA------LET 319

  Fly   327 DPHDQLAIAYHLIIDNKRFADDAANQINEINNFFVAGSPPP---------PPPPPVPQSSMDHQA 382
            :.::.:...|.|:      |:....:..|......:.||..         |....|||...|.. 
 Frog   320 NKYNHITATYFLL------AERILREKQEKETQTRSASPSNIKAQFRQSWPTKIDVPQDLEDDL- 377

  Fly   383 PLATVTVGGGTSASSGTATPVPPVAGGTPSSTIPIRPHPER 423
                            ||:|:..||         ::|.|.|
 Frog   378 ----------------TASPIAHVA---------VQPTPAR 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 110/256 (43%)
UBA_AID_AMPKalpha 297..360 CDD:270521 6/62 (10%)
AMPKA_C 457..580 CDD:213378
snrkNP_001123824.1 STKc_SNRK 12..269 CDD:270976 110/257 (43%)
UBA_SNRK 288..335 CDD:270524 7/58 (12%)
Blue background indicates that the domain is not in the aligned region.

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