DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AMPKalpha and nuak2

DIOPT Version :9

Sequence 1:NP_477313.1 Gene:AMPKalpha / 43904 FlyBaseID:FBgn0023169 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001121499.1 Gene:nuak2 / 100158605 XenbaseID:XB-GENE-5857794 Length:570 Species:Xenopus tropicalis


Alignment Length:536 Identity:174/536 - (32%)
Similarity:254/536 - (47%) Gaps:87/536 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TLGTGTFGKVKIGEHQITRVKVAVKILNRQKIKSLDVVGKIRREIQNLKLFRHPHIIKLYQVIST 97
            |||.||:|:||.......| :||:|.:.:.:||....:..||||.:.:....|||||.:|:|...
 Frog    31 TLGKGTYGRVKRARDSQGR-EVAIKSIRKDRIKDEQDMLHIRRETEIMSSLCHPHIISIYEVFEN 94

  Fly    98 PSDIFMIMEYVSGGELFDYIVKHGKLQEHQARRFFQQIISGVDYCHRHMIVHRDLKPENLLLDHN 162
            .|.|.::|||.|.|:|:|||.:..:|.:|:|||||:||:|.|.|||.:.|||||||.||:|||.|
 Frog    95 SSKIVIVMEYASQGDLYDYISERQRLSDHEARRFFRQIVSAVQYCHANGIVHRDLKLENILLDEN 159

  Fly   163 MHVKIADFGLSNMMLDGEFLRTSCGSPNYAAPEVISGKLYAGPEVDIWSCGVILYALLCGTLPFD 227
            .:||||||||||:.....:|:|.||||.||:||:::|:.|.|||||.||.||:||.|:.|.:|||
 Frog   160 KNVKIADFGLSNIYNSESYLQTYCGSPLYASPEIVNGRPYVGPEVDSWSLGVLLYILVHGCMPFD 224

  Fly   228 DEHVPTLFRKIKSGIFPIPEYLNKQVVNLVCQMLQVDPLKRANIEEIKKHEWFQKDLPAYLFPSS 292
            .:....|..:|.||.:..|.: ......|:..:|.|:|.:||.:.::..|.|...   .|..|.:
 Frog   225 GQDYKKLVAQISSGAYKEPTH-PSDACGLIRWLLMVNPERRATLADVASHWWVNW---GYTQPLT 285

  Fly   293 IEQDSNVIDTYAVAEVCTKFGVKETEVHNSLLSG----------DPHDQLA--IAYHL---IIDN 342
            ..:.                 .|:||...:::.|          |.:.::.  :..||   .|..
 Frog   286 EPEH-----------------FKDTESPLAIVGGWLRRSSRPLWDNNSKMRCFLRQHLPGGTITR 333

  Fly   343 KRFADDAANQINEINNFFVAGSP----PPPPPPP------VPQ-------SSMDHQAPLATVTVG 390
            :|....:..: |.||...|..:|    |..||.|      .||       ||.:|...|   |..
 Frog   334 QRSLKRSKKE-NNINQGAVTQTPQEKIPSVPPAPKKGILKKPQQRESGYYSSPEHNEDL---TRA 394

  Fly   391 GGTSASSGTATPVPPVAGGTPSSTIPIRPHPERIAPMRDRQ--LAMSVQTSGGGAFPEKTARG-G 452
            ..........||.||   ..|:.......|.|. ||...|:  |..:.:.|...|.|..|... .
 Frog   395 ENIELPPSPLTPSPP---EIPTCNTDSDRHDEP-APNGGRKGILKRNGKFSSPWAAPHLTFDALD 455

  Fly   453 TPIKRAKWHLGIRSQSKPNDIMLEVYRAMKALSYE-------WKIIN---PYHVRVRRQN--VKT 505
            .|:...|.|.|.    .|.|      ||..::|.|       :::::   .|..|.|.:.  ::.
 Frog   456 CPLNEEKMHGGF----LPRD------RASSSISQESILSTESFELLDFPGKYRERTRGKTRLMRN 510

  Fly   506 GKFSKMSLQLYQVDAK 521
            ...::..|||.:.|.|
 Frog   511 SLSAEDLLQLDEGDKK 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMPKalphaNP_477313.1 STKc_AMPK_alpha 25..280 CDD:270981 113/246 (46%)
UBA_AID_AMPKalpha 297..360 CDD:270521 12/77 (16%)
AMPKA_C 457..580 CDD:213378 17/77 (22%)
nuak2NP_001121499.1 PKc_like 22..276 CDD:304357 113/246 (46%)
S_TKc 26..276 CDD:214567 113/246 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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