DRSC/TRiP Functional Genomics Resources

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Protein Alignment E23 and Abca14

DIOPT Version :9

Sequence 1:NP_524648.3 Gene:E23 / 43895 FlyBaseID:FBgn0020445 Length:1017 Species:Drosophila melanogaster
Sequence 2:XP_038957098.1 Gene:Abca14 / 365362 RGDID:1561491 Length:1691 Species:Rattus norvegicus


Alignment Length:805 Identity:144/805 - (17%)
Similarity:303/805 - (37%) Gaps:226/805 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 SYHFEKSAAANQQKQHHNINICNSHHPHHHSQNQPQH-----SLQLTFQNLNVLHNERQILSDVS 372
            :|.|.:.|.:.::.|..::      .|....:.:|..     .:|..::...:.::....:.|:|
  Rat   496 TYWFGEPALSREESQVSDL------PPSDFMEPEPVDLEAGIQIQHLYKEFTLKNSTLMAVKDLS 554

  Fly   373 GFVSPCEVLAIMGPSGSGKTTLLDCLSGQRHIDSGSVFLNREPLTK---KWRRRIGYVLQEEIFF 434
            ..:...::..::|.:|:||||.|..|:|......|.|:::...::.   :.|:.:|...|:::.|
  Rat   555 LNLYEGQITVLLGHNGAGKTTTLSILTGLYLPTKGKVYISGYDISSDMVQVRKSLGLCPQDDLLF 619

  Fly   435 PQLTLRETVVYTALLRLPESMPRAEKMRQVDHILEALELGCCQQTKFG-----DYLNRGLSGGEK 494
            |.||:.|.:.:..:::   .:....:.|::..:|          |.||     :.:::.||||.|
  Rat   620 PLLTVSEHLYFYCVIK---GISSTNRPREIHRML----------TSFGLLQKSNTMSKDLSGGMK 671

  Fly   495 KRANIACELLTNPLLMLLDEPTSGLDSHSAISLMKVLKRYAQLEQKTIVISVHQPSSQMFHM--- 556
            ::.:|...|:.:..:::|||||||:|..|..::..:|:.|.  :.:||:::.|       ||   
  Rat   672 RKLSIIIALIGDTKVVILDEPTSGMDPVSRRAIWDLLQHYK--KDRTILLTTH-------HMDEA 727

  Fly   557 ---FDKLLLLHQGRTAYFGD---VQNIYRHFEDIG---VTIKPHYNPADFVLEQLKSH-PDIR-- 609
               .|::.:|..|.....|.   ::.:|    .:|   |.:|...:....:.:.:|:: |...  
  Rat   728 DVLGDRIAILVMGVLKCCGSSLFLKKLY----GVGYHLVIVKTPDSDDGKISQLIKNYIPTAEME 788

  Fly   610 -----EKLFIAAKESHGNYLNRNCITSSHHNQVSVSGAKGKKQADSILIDDIINNYYNQRSNRHH 669
                 |..||..||....:............::.:||.    ......:|::.....|....:.:
  Rat   789 TNVAAELSFILPKEHTHRFAELFTDLEERQEELGISGF----GVSMTTMDEVFFKVSNLADLKLN 849

  Fly   670 HQYENLHHTSNGCRVEEDEEAAQHLVWCAADSQSNFSSCASSDCH---SYSAGSGPGHSADDDWL 731
            .:......|.|....|.:|.         .:...||.....|..:   |::||          |.
  Rat   850 TEIAQSASTVNPSTSENNEN---------MNVPRNFERSGYSGRYSDSSFNAG----------WP 895

  Fly   732 SYPTSFHTQF---CVLSSRNFREAKPRMLSKLNWFQTIGLALMAGAIWFQLPR-------TEEF- 785
            .|...|...|   .:.|.||::    .:|.:|...|.:...|:.| |.|.:|:       .|:: 
  Rat   896 LYMQQFRAMFIKRVMFSWRNWK----LLLLQLLALQGLTYVLIKG-IGFSVPKEPARVMDLEQYG 955

  Fly   786 --------------------------------LHDLQGWMFFSQTYWML--FALFGALNSFPSER 816
                                            :|::||.:   |.|.:.  ..::..:.:|  ..
  Rat   956 ETTVPFSVSGDPPLTQKLTKNLEIMLKDKKQKVHEVQGGV---QDYLLTNKDCIYSCIVAF--SL 1015

  Fly   817 EVVSKER------RSGAYRLSAYYLAKMCAELPLVITLPTVYLMIS-----YPML-------GCT 863
            :|..||:      .:.||..|...|:.:...:...::.|...:.:|     .|..       ..:
  Rat  1016 DVTRKEKTFTFWFNNEAYHASPLSLSILDNIIFKYLSGPDATITVSNKPQPQPFTKGRSEERSAS 1080

  Fly   864 SLKLFFLMLIFLLINTIVAQSVGFFIGACCMDMNVSIT-------LSALYTLATQLFGGYLSSRI 921
            .:::.|.:|..:.|         |..|.|.|.:...::       :|.:|||     ..:||:  
  Rat  1081 GIQIVFNLLFGMSI---------FTSGFCLMTVTERVSKAKHIQFVSGVYTL-----NFWLSA-- 1129

  Fly   922 PEGLSWIRYTSMIHYAYQNMQILEFREGAAIGCGSPSSYEICKQQSTEFIPYEEILKAQNSTSPL 986
               |.|   ..:||:....:.:|.|.                      :.....:|:..|     
  Rat  1130 ---LLW---DLIIHFVACVLLLLVFL----------------------YTDVHILLENYN----- 1161

  Fly   987 WLNTLILMMFFLVFRCLGYAVLRFL 1011
            :|:|::::|.|      |::::.|:
  Rat  1162 FLDTMLILMLF------GWSIIPFI 1180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E23NP_524648.3 ABCG_EPDR 350..572 CDD:213180 53/235 (23%)
3a01204 363..1009 CDD:273361 136/746 (18%)
ABC2_membrane 744..943 CDD:279410 45/265 (17%)
Abca14XP_038957098.1 rim_protein <100..1681 CDD:130324 144/805 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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