DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E23 and abcg4

DIOPT Version :9

Sequence 1:NP_524648.3 Gene:E23 / 43895 FlyBaseID:FBgn0020445 Length:1017 Species:Drosophila melanogaster
Sequence 2:XP_004916110.1 Gene:abcg4 / 101734071 XenbaseID:XB-GENE-22063023 Length:639 Species:Xenopus tropicalis


Alignment Length:684 Identity:189/684 - (27%)
Similarity:319/684 - (46%) Gaps:120/684 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   347 PQHS-LQLTFQNLNVLHNE---------RQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQ 401
            |:.| :.:.|::|:....|         :.:|..:||.....|::.||||||:||:||::.|:|.
 Frog    50 PKRSAVDIEFKDLSYSVREGPCWRKRGYKTLLKCLSGMFCSRELIGIMGPSGAGKSTLMNILAGY 114

  Fly   402 RHID-SGSVFLN-REPLTKKWRRRIGYVLQEEIFFPQLTLRETVVYTALLRLPESMPRAEKMRQV 464
            |... :|.:.:| ::...:.:|:...|::|:::..|.||::|.::.:..|:|.|.|...:|:  |
 Frog   115 RESGMTGQILVNGKQRELRTFRKMSCYIMQDDMLLPHLTVKEAMMVSTNLKLNEKMEVKKKL--V 177

  Fly   465 DHILEALELGCCQQTKFGDYLNRGLSGGEKKRANIACELLTNPLLMLLDEPTSGLDSHSAISLMK 529
            :.||.||.|..|..|:     ...||||::||..||.||:.||.:|..|||||||||.|...::.
 Frog   178 NEILTALGLLDCSGTR-----TLFLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVS 237

  Fly   530 VLKRYAQLEQKTIVISVHQPSSQMFHMFDKLLLLHQGRTAYFGDVQNIYRHFEDIGVTIKPHYNP 594
            :|...|| ..:||:.::||||:::|.||:||.:|.||:..|.|.|.::..:.:.:|:....::||
 Frog   238 LLNSLAQ-GGRTIICTIHQPSAKLFEMFNKLYILSQGQCIYRGSVTHLIPYLKGLGLHCPTYHNP 301

  Fly   595 ADFVLEQLK-SHPDIREKLFIAAKESHGNYLNRNC-ITSSHHNQVSVSGAKGKKQADSILIDDII 657
            |||::|... .:.|:...||.|.::.       .| ||.....|..:                  
 Frog   302 ADFIIELASGEYGDLNPLLFRAVEDG-------LCPITRDKSQQTKL------------------ 341

  Fly   658 NNYYNQRSNRHHHQYENLHHTSNGCRVEEDEEAAQHLVWCAADSQSNFSSCASSDCHSYSAGSGP 722
                                         |:|   |   |..|...:..|      |:::     
 Frog   342 -----------------------------DQE---H---CPNDVSVHVES------HTFA----- 360

  Fly   723 GHSADDDWLSYPTSFHTQFCVLSSRNFRE-AKPRMLSKLNWFQTIGLALMAGAIWFQLPRTEEFL 786
                        ||...|||:|..|.|.. .:..:|:.|.:...:.:.::.|.::..:......:
 Frog   361 ------------TSSLNQFCILFKRTFLSILRDTVLTHLRFMSHLCIGVLIGLLYLHIGDDASKV 413

  Fly   787 HDLQGWMFFSQTYWMLFALFGALNSFPSEREVVSKERRSGAYRLSAYYLAKMCAELPLVITLPTV 851
            .:..|::|||..:.|..||...:.:||.|..|..:|..:..|.|.||||||..|::|..|..|..
 Frog   414 FNNTGFLFFSMLFLMFAALMPTVLTFPLEMSVFLREHLNYWYSLKAYYLAKTMADVPFQIVCPVA 478

  Fly   852 YLMISYPMLGCTSLKLFFLMLIFLLINT-IVAQSVGFFIGACCMDMNVSITLSALYTLATQLFGG 915
            |..|.|.|.........||:...|..:| :||||:|..||.....:.|:..:..:..:...||.|
 Frog   479 YCSIVYWMTSQPPEVSRFLLFSALATSTALVAQSLGLLIGVASNSLQVATFVGPVTAIPVLLFSG 543

  Fly   916 YLSS--RIPEGLSWIRYTSMIHYAYQNMQILEF-REGAAIGCGS-PSSYEICKQQSTEFIPYEEI 976
            :..|  .||..|.|..|.|.:.|.::.:.:..: .:.|.:.|.. |.:::: .||..:.:..|: 
 Frog   544 FFVSFKTIPTYLQWCSYISYVRYGFEGVILAIYGMDRAPLQCRELPCTFQL-PQQVLQELDVED- 606

  Fly   977 LKAQNSTSPLWLNTLILMMFFLVFRCLGYAVLRF 1010
                   :.|:::.|:|..|||..|.|.|.|||:
 Frog   607 -------AKLYVDFLVLGGFFLGLRLLAYLVLRY 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E23NP_524648.3 ABCG_EPDR 350..572 CDD:213180 84/233 (36%)
3a01204 363..1009 CDD:273361 183/664 (28%)
ABC2_membrane 744..943 CDD:279410 57/202 (28%)
abcg4XP_004916110.1 3a01204 40..639 CDD:273361 189/684 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.