DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E23 and abcg1

DIOPT Version :9

Sequence 1:NP_524648.3 Gene:E23 / 43895 FlyBaseID:FBgn0020445 Length:1017 Species:Drosophila melanogaster
Sequence 2:XP_002942182.2 Gene:abcg1 / 100496811 XenbaseID:XB-GENE-996335 Length:664 Species:Xenopus tropicalis


Alignment Length:664 Identity:197/664 - (29%)
Similarity:314/664 - (47%) Gaps:120/664 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   365 RQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQRHID-SGSVFLNREPLTKKWRRRIG-YV 427
            :.:|..:||.....|:.|||||||:||:||::.|:|.|... .|.|.:|.:|...:..|::. |:
 Frog    97 KTLLKGISGKFHCGELAAIMGPSGAGKSTLMNILAGYRETGMKGEVLINGQPRDLRSFRKVSCYI 161

  Fly   428 LQEEIFFPQLTLRETVVYTALLRLPESMPRAEKMRQVDHILEALELGCCQQTKFGDYLNRGLSGG 492
            :|:::..|.||::|.::.:|.|:|.|.....::|  |..||.||.|..|..|:.|     .||||
 Frog   162 MQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRKEM--VKEILTALGLLPCADTRTG-----SLSGG 219

  Fly   493 EKKRANIACELLTNPLLMLLDEPTSGLDSHSAISLMKVLKRYAQLEQKTIVISVHQPSSQMFHMF 557
            ::||..||.||:.||.:|..|||||||||.|...::.::|..|| ..:.|:.::||||:::|.:|
 Frog   220 QRKRLAIALELVNNPPVMFFDEPTSGLDSSSCFQVVSLMKSLAQ-GGRNIICTIHQPSAKLFELF 283

  Fly   558 DKLLLLHQGRTAYFGDVQNIYRHFEDIGVTIKPHYNPADFVLEQLKSHPDIREKLFIAAKESHGN 622
            |:|.:|.||:..|.|.|.|:..:...:|:....::|||||::|             :|:.|    
 Frog   284 DQLYVLSQGQCIYRGKVSNLVPYLRVLGLNCPTYHNPADFIME-------------VASGE---- 331

  Fly   623 YLNRNCITSSHHNQVSVSGAKGKKQADSILIDDIINNYYNQRSNRHHHQYENLHHTSNGCRVE-- 685
                                                 |.:|..:......:||      |.||  
 Frog   332 -------------------------------------YGDQNPHLVRAVQDNL------CEVEPK 353

  Fly   686 -----EDEEAAQHLVWCAADSQSNFSSCASSDCHSYSAGSGPGHSADDDWLSYPTSFHTQFCVLS 745
                 |:|::.  |:|...|...:    .:..|||:||                 |..||||:|.
 Frog   354 RDLCGENEQSP--LMWHRPDEDPS----PTEGCHSFSA-----------------SCLTQFCILF 395

  Fly   746 SRNF-REAKPRMLSKLNWFQTIGLALMAGAIWFQLPRTEEFLHDLQGWMFFSQTYWMLFALFGAL 809
            .|.| ...:..:|:.|.....||:.::.|.::..:....:.:....|::|||..:.|..||...:
 Frog   396 KRTFINIMRDSVLTHLRITSHIGIGILIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTV 460

  Fly   810 NSFPSEREVVSKERRSGAYRLSAYYLAKMCAELPLVITLPTVYLMISYPMLGCTSLKLFFLMLIF 874
            .:||.|..|..:|..:..|.|.||||||..|::|..|..|..|..|.|.|....|..|.|::...
 Frog   461 LTFPLEMGVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDALRFILFAA 525

  Fly   875 L-LINTIVAQSVGFFIGACCMDMNVSITLSALYTLATQLFGGYLSS--RIPEGLSWIRYTSMIHY 936
            | .:.::||||:|..|||....:.|:..:..:..:...||.|:..|  .||..|.|:.|.|.:.|
 Frog   526 LGTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPSYLQWMSYMSYVRY 590

  Fly   937 AYQNMQILEF----REGAAIGCGSPSSYEICKQQSTEFIPYEEILKAQN-STSPLWLNTLILMMF 996
            .::.: ||..    ||.  :.|.        |.::..|...|.|||..: ..:.|:|:.:||.:|
 Frog   591 GFEGV-ILSIYGLDRED--LHCE--------KDETCHFQKSEAILKELDVEDAKLYLDFIILGVF 644

  Fly   997 FLVFRCLGYAVLRF 1010
            |:..|...|.||::
 Frog   645 FVTLRLTAYFVLKY 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E23NP_524648.3 ABCG_EPDR 350..572 CDD:213180 82/208 (39%)
3a01204 363..1009 CDD:273361 196/661 (30%)
ABC2_membrane 744..943 CDD:279410 60/202 (30%)
abcg1XP_002942182.2 3a01204 59..664 CDD:273361 197/664 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

Return to query results.
Submit another query.