DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sif and vav2

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:XP_031746376.1 Gene:vav2 / 733982 XenbaseID:XB-GENE-6067166 Length:914 Species:Xenopus tropicalis


Alignment Length:420 Identity:95/420 - (22%)
Similarity:170/420 - (40%) Gaps:116/420 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1450 LTDAEKLRKVVMELVDTERTYVKHLNNLLEHYLEPMKRETFLSNAEINALFGNIHEIVTFQRQFL 1514
            :|:.:|....::|:.:||..|.:.|.::..:|:.|:|:  .||..||:.:|.|:.|::.....||
 Frog   192 MTEDDKRNCCLLEIRETEDRYYRTLEDIKTYYMIPLKQ--ILSVQEISTIFINLEELIKVHFNFL 254

  Fly  1515 QNLEESLDLEPDFNKFEHCGQFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNHA 1579
            :.:|.|:               .:....||..||.|.....:|..:|:....:||         .
 Frog   255 RTIELSV---------------MSGGSTIGQVFLDYKEKLLIYGEYCSHIEYSQK---------T 295

  Fly  1580 LQEFLAARN-----------PKQQHSSTLESYLIKPIQRILKYPLLLQQMRNLTDTRAD--EHVH 1631
            |.:.:|.|.           ..|:....|:..|:.|:||:|||.|||:::.:.|   ||  |...
 Frog   296 LDQLIATREDVRTKLEECSLKVQEGKFKLQDLLVIPMQRVLKYHLLLKELLSHT---ADSPERQT 357

  Fly  1632 LCEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWL--NIS 1694
            |.|||..|:.:|.:|||::|..|....|.:                      :...:|.|  |:.
 Frog   358 LKEALDAMQDLAMYINEVKRDKETLKKISE----------------------FQNSIENLQVNLE 400

  Fly  1695 DF-LGKIKKGLELHAM---------CFVFKSAVVFLCKER--LRQKKKLMGVSSKNATNEVEIIR 1747
            :| ..||...|::.:|         .|:| ..||.:||.|  ..:.|:::.:.....:::     
 Frog   401 EFGRPKIDGELKVRSMVNQAKQDRYLFLF-DKVVIVCKRRGYNYELKEIIELLCHKMSDD----- 459

  Fly  1748 YQVLIPVTEVQVRASSAKDMDSHFLWE----LIHLRSQLQRRSEKVYVLSNSTADFRNAFLKTIR 1808
                 |:....|:.|..|      :|.    ||||:.:               ..|: .|.|| .
 Frog   460 -----PMNNKDVKKSHGK------MWSYGFFLIHLQGK---------------QGFQ-FFCKT-E 496

  Fly  1809 QIIRESVRNMSIPMKNFGGSSGSVSGHSSQ 1838
            ::.|:.:....:.|.|......:.:.|:.|
 Frog   497 EMKRKWMEQFEMAMSNIKPDKANANHHNFQ 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413
PDZ_signaling 1221..1308 CDD:238492
RhoGEF 1456..1647 CDD:238091 53/203 (26%)
PH2_Tiam1_2 1650..1823 CDD:269957 33/190 (17%)
PH 1693..1812 CDD:278594 26/134 (19%)
vav2XP_031746376.1 CH_VAV2 3..121 CDD:409112
RhoGEF 201..373 CDD:395496 53/200 (27%)
PH_Vav 388..515 CDD:269930 32/160 (20%)
C1_VAV2 518..575 CDD:410418 2/9 (22%)
SH3_VAV2_1 629..688 CDD:212913
SH2_Vav2 699..801 CDD:198269
SH3_VAV2_2 855..912 CDD:212910
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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