DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sif and Net1

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:NP_062645.2 Gene:Net1 / 56349 MGIID:1927138 Length:595 Species:Mus musculus


Alignment Length:698 Identity:127/698 - (18%)
Similarity:239/698 - (34%) Gaps:220/698 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1342 VMSEEMITGL-----------------------IVPAPGWNGTSK----------------DLYS 1367
            ::|||...||                       :.|.|.|:.|.|                ||  
Mouse    22 MLSEEPAAGLPADTPGPAANERCSLRRGSSFTFLTPGPHWDFTLKRKRREKDDDAVSLSSLDL-- 84

  Fly  1368 PEAESSPATSFVDPAAMAAQLAVGGVGGVVVGGLGVAKPTSRTSSFEIENLLKTAEQETRKS--- 1429
                ..|:...|.|.|....||            .:..|....:   :....:|.:..|.:.   
Mouse    85 ----KEPSNKRVRPLARVTSLA------------NLISPVRNGA---VRRFGQTIQSFTLRGDHR 130

  Fly  1430 SPTGSVTSSVSTTALTPSRQ-----------------LTDAE-KLRKVVMELVDTERTYVKHLNN 1476
            ||..:..|...:|..||:::                 ||..| |.::.:.||...|:..::.|..
Mouse   131 SPASAQKSFSRSTVPTPTKRRSSALWSEMLDINMKESLTTREIKRQEAIYELSRGEQDLIEDLKL 195

  Fly  1477 LLEHYLEPMKRETFLSNAEINALFGNIHEIVTFQRQFLQNLEESLDLEPDFNKFEHCGQFRNVLF 1541
            ..:.|.:||.:.:.:|..|:..:||::...:......|..:.|:  .:||           ..:.
Mouse   196 ARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEA--TKPD-----------GTVE 247

  Fly  1542 AIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNHALQEFLAARNPKQQHSSTLE--SYLIKP 1604
            .||...:.::.....|..:|::...|:.:|...:.:..:|:|| .|..:...|..|:  |:|..|
Mouse   248 QIGHILVNWLPGLNAYRGYCSNQLAAKALLDQKKQDPRVQDFL-QRCLESPFSRKLDLWSFLDIP 311

  Fly  1605 IQRILKYPLLLQQMRNLTDTRADEHVHLCEALKGMEKVAEHINEMQRIHEEYGAIFDHLFRQHQK 1669
            ..|::||||||:::  |..|..|.        :.::.:.|.|..:|      |.:.|...::.:.
Mouse   312 RSRLVKYPLLLKEI--LRHTPKDH--------RDVQLLEEAILIIQ------GVLSDINLKKGES 360

  Fly  1670 SCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKERLRQKKKLMGV 1734
            .|:           ||     :|..::|.:.:|...:.|       :.|.||...|:.|      
Mouse   361 ECQ-----------YY-----INKLEYLDEKQKDPRIEA-------SKVLLCHGELKNK------ 396

  Fly  1735 SSKNATNEVEIIRYQVLIPVTEVQVRASSAKDMDSHFLWELIHLRSQLQRRSEKVYVLSNSTADF 1799
                :.:::.|..:|.::.:|....|.                     :|...:||         
Mouse   397 ----SGHKLYIFLFQDILVLTRPVTRN---------------------ERHLYQVY--------- 427

  Fly  1800 RNAFLKTIRQIIRESVRNMSIPMKNFGGSSGSVSGHSSQGMGSMGY------PGNSQTLE----- 1853
            |...  .:::::.|.:::..:.|   |||.....|:|.:.......      ||:|.||:     
Mouse   428 RQPI--PVQELVLEDLQDGDVRM---GGSFRGAFGNSDKAKNIFRVRFQDPSPGHSHTLQANDVF 487

  Fly  1854 RPKQQITIVHGS----HTLGKPKKKSG---------SQRHSAGNIDYDNLSGSQEADDLPPSVGV 1905
            ..:|....:..:    .....|.:..|         ....||||:      .:|....:.|.|..
Mouse   488 HKQQWFNCIRAAIAPFQRAASPLELQGLPDLHEECEENNPSAGNL------RAQRRSCVVPGVMQ 546

  Fly  1906 VHYASGHTHGQQMQPAGFRGRSKTVGDVTEITCSSPEPHQQQQQQQQQ 1953
            :...|....|..:|         ||.|...:....|:|..::.:.:.|
Mouse   547 IDEESALDCGSSVQ---------TVEDTRNMKAQRPQPGLRRARDKAQ 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413
PDZ_signaling 1221..1308 CDD:238492
RhoGEF 1456..1647 CDD:238091 41/192 (21%)
PH2_Tiam1_2 1650..1823 CDD:269957 24/172 (14%)
PH 1693..1812 CDD:278594 16/118 (14%)
Net1NP_062645.2 Necessary for nuclear localization 1..74 10/51 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..42 5/19 (26%)
Nuclear localization signal 12..19
Nuclear localization signal 66..72 1/5 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..151 6/23 (26%)
RhoGEF 178..354 CDD:214619 45/205 (22%)
PH_Net1 368..502 CDD:270044 29/185 (16%)
PH 387..501 CDD:278594 25/158 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 555..595 8/40 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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