DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sif and arhgef9b

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:XP_021336708.1 Gene:arhgef9b / 560923 ZFINID:ZDB-GENE-030131-7745 Length:573 Species:Danio rerio


Alignment Length:639 Identity:128/639 - (20%)
Similarity:199/639 - (31%) Gaps:262/639 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly  1974 REPPPPPIRQPHLHHHSSDIERIDPGTKSEGEEDSQQGTIRPKATLGRTPNHLTLSTTSTL---- 2034
            |:.|..|.|:||        ..|.||                      .|:.|.||.|:.:    
Zfish    76 RKAPSDPDRRPH--------SMILPG----------------------EPSFLKLSITNKVRNFK 110

  Fly  2035 -----SVGSTGSQARLIQSSHPPASYQPVLMKDLG------KPSPDESELES---------ESEV 2079
                 || ..|..:|:..|.:      .:.:||.|      |.|| .||.::         ....
Zfish   111 KLKSPSV-FKGKASRISDSKY------NIDLKDEGDDMYMCKDSP-SSEFKNVFKNKAKRHSFAG 167

  Fly  2080 HAAQVAASFNLSLGSSGSLFASDARDNQTQSRTQSQIHSLHPSPRQSPR------QSPRQSPKQD 2138
            |.|....||. .:..||:      .|| .|..|::.: |.|...:.|.|      ..|..|...:
Zfish   168 HTADFYCSFE-DIDPSGT------PDN-VQEETKNTV-SNHNGCKLSERVIYTKKSHPNFSNCNN 223

  Fly  2139 IEVIEIFESEAERLAASQQVAVVHQHPSDQARESGHK--QRRDRDRNPTETDATARFMDKHL--- 2198
            ..|||                     |.|...:...|  |||...|.....:...|...|..   
Zfish   224 SSVIE---------------------PEDSCAKQSFKIPQRRRWSRGGDVLNYLRRISLKGKGSQ 267

  Fly  2199 ----SDLEQENLTDGTCD---------IVAYMESLREKA---------------FDPQDLAEDTG 2235
                |..|..|..|.|.|         :|..:.|..|::               |:  .:||...
Zfish   268 TLAESSFESMNTLDKTIDSDYGSVSFELVKDLNSAPEQSGVDGKSGHFRGLLRFFN--TVAETAM 330

  Fly  2236 DHQQNDSSLSP----EPQTIVENTQQT--VVVDIESPSRPATESDST--GNTTGPSERSGDETEE 2292
            ..:.:..|.||    :.|..:..|||:  ::.:...|.|...:.|::  |.:|.|.:        
Zfish   331 KWRNSSRSFSPPEGQQSQLDLRKTQQSGELIQNTPLPVRSEHKDDTSVHGKSTLPLD-------- 387

  Fly  2293 EATTSSLASHIVVIDKKVDKIFKAKSPERPASTKVKGGRRQIYISPDRCKSQGSSPVRIIKI--- 2354
                  :...:..::.|||                             |     ||..::|.   
Zfish   388 ------MCKVVSTVNDKVD-----------------------------C-----SPPVVLKAWRT 412

  Fly  2355 --KSPRTSLSDQGKRLSVCSSRDNSQDRLSAGRRT-----PSPR-RSSEGGGILKHTTG------ 2405
              .|||.|       .|:|::.|.||.::|:...:     ..|| ..:|...:|||..|      
Zfish   413 CPDSPRDS-------NSLCNNSDESQSQISSTHISLATIESHPRYEEAEPPALLKHLPGKTEDEN 470

  Fly  2406 ------------PD---------PGILKPPSSPAKSKSPDRSCLKKGGPSHVCSVE--TLSPRVS 2447
                        |:         ||  |.|:.| ..|:..:.|.....|:.:.::|  ||:..::
Zfish   471 QDTCMDRKKFICPEDIFKTLSRPPG--KSPADP-PLKALLQRCCSLPLPNTLSALEPITLTHVLT 532

  Fly  2448 PRGSMDHLSPDRGMTSSSCLRHSPRSSFDSHGESDHNLDVPHGSRKRSMSAHGS 2501
            |        |.:.:..||.||....|:               ||.:|.:...||
Zfish   533 P--------PAKSIAKSSILRMRNSST---------------GSNRRKLFRPGS 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413
PDZ_signaling 1221..1308 CDD:238492
RhoGEF 1456..1647 CDD:238091
PH2_Tiam1_2 1650..1823 CDD:269957
PH 1693..1812 CDD:278594
arhgef9bXP_021336708.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3519
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.