DRSC/TRiP Functional Genomics Resources

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Protein Alignment sif and arhgef7b

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:XP_017210203.1 Gene:arhgef7b / 494081 ZFINID:ZDB-GENE-041212-49 Length:856 Species:Danio rerio


Alignment Length:1144 Identity:219/1144 - (19%)
Similarity:382/1144 - (33%) Gaps:393/1144 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1172 RRNLNPMEHFVRVKKR------------RDMEDHN-YFVPHRNDLIENYLHNHEFVEVCMKILYQ 1223
            ::.|:..|.|::...|            |....|. |..|.:::.:.|.   .|||:.|  .||.
Zfish    21 KKTLSDPEGFLQASLRDGVVLCKLLERLRPGSVHTIYQDPRKDECLSNI---REFVKGC--ALYH 80

  Fly  1224 VELQRTTLEQMWGFSVEA-ELIENAERQDELCCYV--SRVEDKSVAMHNGIIKGDEIMVINGAIV 1285
            :|:            .|| :|::.......|.|.|  ::...:|....|.:.             
Zfish    81 IEV------------FEANDLLQGQNFSKVLNCLVALNKATSESGGGSNSVC------------- 120

  Fly  1286 SDLDMMYLESVLQEEQSLSMMMRSSRTEPPDLVGIMRVTDDMIDSLVCPPP-------------P 1337
                         ..||.|:.::|                  .|||.|...             .
Zfish   121 -------------SRQSSSLRIKS------------------FDSLNCSSTHRRSSRHKFNQYRS 154

  Fly  1338 TDPPVMSEEMITGLIVPAP-GWNGTSKDLYSPEAESSPATSFVDPAAMAAQLAVGGVGGVVVGGL 1401
            .|   |||.....::|.|. .:..|::|..|        .|..|...:..|...|...|.:.|  
Zfish   155 LD---MSENSAPQVLVKARFNFQQTNEDELS--------FSKGDIIQVTRQEEGGWWEGALNG-- 206

  Fly  1402 GVAKPTSRTSSFEIENLLKTAEQETRKSSP-TGSVTSSVSTTALTPSRQLTDAEKLRK----VVM 1461
                   :|..|. .|.:|..:...:..|| ||::.|        |.:.:..|...:.    ||.
Zfish   207 -------KTGWFP-SNYVKEIKGSDKPVSPKTGTLKS--------PPKAIESANFCKTYYNVVVQ 255

  Fly  1462 ELVDTERTYVKHLNNLLEHYLEPMKRETFLSNAEINALFGNIHEIVTFQRQFLQNLEESLDLEPD 1526
            .::.||..|.|.|.|||..||..::....||.::|:.:.||:.||.:||:..:.:|||::.:...
Zfish   256 NILQTETEYCKELQNLLSVYLRALQPTDRLSVSDISHIMGNLEEISSFQQTLVHSLEENVKVSDS 320

  Fly  1527 FNKFEHCGQFRNVLFAIGSAFLYYVNHFK-LYSSFCASHSKAQKVL--HPNEGNHALQEFLAARN 1588
            ..:             ||..||..:...: ||.::|::|..|..||  |..|    |.||:.::.
Zfish   321 QQR-------------IGGFFLSLLTQMRSLYVTYCSNHPSAVNVLTQHSEE----LGEFMESKG 368

  Fly  1589 PKQQHSSTLESYLIKPIQRILKYPLLLQQMRNLTDTRADEHVHLCEALKGMEKVAEHINEMQRIH 1653
            .......||.:.|.||..|:.|||.||::|        :.|                   |:.:|
Zfish   369 ANTPGILTLTTGLSKPFLRLEKYPTLLKEM--------ERH-------------------MEPLH 406

  Fly  1654 EEYGAIFDH--LFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKKGLELHAMCFVFK-- 1714
            .:|..|...  ||:.....|::.                        :.:|.|||..:....:  
Zfish   407 PDYPDIQKSMTLFKNLSAQCQEV------------------------RKRKELELQILMESIRGW 447

  Fly  1715 --------SAVVFLCKERLRQKKKLMGVSSKN---------------ATNEVEIIRYQVLIPVTE 1756
                    ..|:|:.:..::..    |...||               |:..:....||..:|:|.
Zfish   448 EGEGIKTLGTVLFMSQVIIQNH----GAEEKNERYLLLFPHILLMLSASPRMSGFIYQGKLPLTG 508

  Fly  1757 VQVRASSAKDMDSHFLWELIHLRSQLQRRSEKVYVLSNSTADFR---NAFLKTIRQIIRESVRNM 1818
            :.|..:...|...| .:|:      .....|::.|:.|:..|.:   :...:..::|...|::..
Zfish   509 MSVSKTEDSDGTKH-AFEI------SGNMIERIQVICNNQQDLQDWVDHLHRQTKRISTSSLKPQ 566

  Fly  1819 SIPMKNF-------------GGSSGSVSGHSSQGMGSMGYPGNSQ---TLERPKQQITIVHGSHT 1867
            |:|....             .|.|||...|:...:.|:|.|.:..   .||.||.|         
Zfish   567 SVPCHTLPSHPLTPSRHSESRGVSGSPVYHTLPHLSSLGTPHSGMMWGPLEPPKTQ--------- 622

  Fly  1868 LGKPKKKSGSQRHSAGNIDYDNLSGSQEADDLPPSVGVVHYASGHTHGQQMQPAGFRGRSKTVGD 1932
              ||.                :||..:.|..|.||..:.:                         
Zfish   623 --KPW----------------SLSCLRPAPPLKPSAALCY------------------------- 644

  Fly  1933 VTEITCSSPEPHQQQQQQQQQQQQLMQQGHAHAHPHPHPHPREPPPPPIRQPHLHHHSSDIERID 1997
             .|....||          :..::|:                 |...|.|:|      ||.|...
Zfish   645 -KEDLSKSP----------KNMKKLL-----------------PKRKPERKP------SDEEFAV 675

  Fly  1998 PGTKSEGEEDSQ-QGTIRPKATLGRTPNHLTLSTTSTLSVGSTGSQARLIQSSHPPASYQPVLMK 2061
            ..:.:..|||:| ...|....|..:|  ..||::|..   |:......::...| .:....|..:
Zfish   676 RKSTAALEEDAQILKVIEAYCTSAKT--RQTLNSTWQ---GTDLMHNHVLADVH-QSCVDAVGCR 734

  Fly  2062 DLGKPSPDESELESESEVHAAQVAASFNLSLGSSGSLFASDARDNQTQSRTQSQIHSLHPSPRQS 2126
            ..|.||.|:||   :|:..:..:..:..:     ||:         ::||.:|..|.|.      
Zfish   735 SSGFPSSDQSE---DSDYDSIWITHTNRI-----GSV---------SRSRKESGPHMLF------ 776

  Fly  2127 PRQSPRQSPKQDIEVIEIFESEAERLAASQQVAVVHQHPSDQARESGHKQRRDRDRNPTETDATA 2191
                    |:::..::|..:|..:.:...:.:........|:.:|.  ||...|.:...|.:..|
Zfish   777 --------PEEEKIIVEETKSNGQTVIEERSLVDTVYALRDEVQEL--KQDNKRMKRTLEEEQKA 831

  Fly  2192 RFMDKHLSDLEQENLTDGTCDIVAYMESLREKAFDPQDL 2230
            |      .:||:.        :...::|:.:.::|..:|
Zfish   832 R------KELEKV--------VRRVLKSMNDPSWDETNL 856

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413 13/59 (22%)
PDZ_signaling 1221..1308 CDD:238492 14/89 (16%)
RhoGEF 1456..1647 CDD:238091 53/197 (27%)
PH2_Tiam1_2 1650..1823 CDD:269957 32/202 (16%)
PH 1693..1812 CDD:278594 23/146 (16%)
arhgef7bXP_017210203.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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