DRSC/TRiP Functional Genomics Resources

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Protein Alignment sif and CG30440

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:NP_610172.1 Gene:CG30440 / 35496 FlyBaseID:FBgn0050440 Length:1057 Species:Drosophila melanogaster


Alignment Length:902 Identity:174/902 - (19%)
Similarity:309/902 - (34%) Gaps:286/902 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1102 NNLLAGRGATKRRPPMLSR-SNSGSSRRSMQMNSR-----DEPEKT-FKVAMPDNAYSTVYLRDA 1159
            ::.|...|..:.|...::| ...|.....:|..::     .||.:| |....||..:....:.|.
  Fly   154 SDFLTAAGGIQSRADRIARIETCGIRTTHLQPETQILKPVTEPNETRFDQHSPDWLFKNSRIGDV 218

  Fly  1160 MSVEEFLASACARRNLNPMEHFVRVKKRRDMEDHNY---FVPHRNDLI--ENYLHNHE------- 1212
            .:..:.  ||| ...|.|.|:    |.|....|..:   ::.:|..||  |:.:...|       
  Fly   219 SNSSKL--SAC-NSELPPEEY----KGRTLYHDTKFDCAYIKNRRPLITTESKMSITEAEHPQTK 276

  Fly  1213 FVEVCMKILYQVELQRTTLEQMWGF--------------SVEAELIENAERQDELCCYVSRVEDK 1263
            :.::  |..|:.......|.|...|              ||:.:..||.::     .::|:..::
  Fly   277 YTDI--KYDYKTCSISQGLHQNKAFLNKVPPSKQSKPFHSVDYDYYENIQK-----LHLSKESER 334

  Fly  1264 SVA-----------MHNGIIKGDEIMVINGAIVS------DLDMMYLESVLQEEQSLSMMMRSSR 1311
            .:.           :...:||.....::..|..|      ||:....:..::||...|....:|.
  Fly   335 QIRDNGDPNDLQNFLKKNLIKATTNELLKAAAQSTKKCNIDLERKLNDLNIKEEDHTSNDSGNSY 399

  Fly  1312 TEPPDLVGIMRVTD-----------------------------------DMIDSLVCPPPPTDPP 1341
            ...|.||.:.::..                                   |::.|........|..
  Fly   400 KNDPYLVSMSKINSCKFIRSYNRDCETIFPTGDHSDLNEFRKSFMPQSVDLLSSASVSLSSCDGS 464

  Fly  1342 VMSEEMITG------------LIVPAPGWNGTSKDLYSPEAE----------------------- 1371
            .::::.|.|            .|...|  |..|||..:...|                       
  Fly   465 CLNKDSICGSEEDCCECNEYQCIATPP--NELSKDCLNAVEEGVFCNTEYDDFHENLTSSCCCSG 527

  Fly  1372 ---SSPATSFVDPAAMAAQLAVGGVGGVVVGGLGVAKPTSRTSSFEIENLLKTAEQETRK----- 1428
               .....|::|.                  ||.|...:....|.....   |.|:.:||     
  Fly   528 SFCDDDGCSYLDE------------------GLSVDIKSKNVQSLHESG---TDEKLSRKTILLA 571

  Fly  1429 -SSPTGSVTSSVS--TTALTPSRQLT-------------DAEKLR----KVVMELVDTERTYVKH 1473
             :..|..||..:|  ||..|.|..:|             |.|..|    .::.||.:||:.||..
  Fly   572 RTEDTNDVTQGISDGTTYFTGSLNITHLPKSNEIFKKPQDPEMQRHRRGHILKELFETEKIYVNE 636

  Fly  1474 LNNLLEHYLEPMKRETFLS---NAEINALFGNIHEIVTFQRQ-FLQNLEESLDLEPDFNKFEHCG 1534
            :.::|:.|.:.:|.:....   ..:.|.||||::||.:|... ||::||..:.:.   .:...|.
  Fly   637 IASILKGYYDRLKSDESAPASLQGKANVLFGNLNEIYSFHNDVFLKDLENCISVT---ERVALCF 698

  Fly  1535 QFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNHALQEFLAARNPKQQHSSTLES 1599
            ..|...|            ::|||.:|.:..:::|:.......|.   |.........|...|.:
  Fly   699 VKRRDKF------------YQLYSFYCQNIQRSEKLRETLVDTHM---FFKECQIGLGHKLPLGA 748

  Fly  1600 YLIKPIQRILKYPLLLQQMRNLTDTRADEHVHLCEALKGMEKVAEHINEMQRIHEEYGAIFDHLF 1664
            ||:||:|||.||.|||:.:...||..:..: .|..||..|..|.:.:|:                
  Fly   749 YLLKPVQRITKYQLLLKDLLLFTDNDSCRN-ELKNALDCMLIVLKCVND---------------- 796

  Fly  1665 RQHQKS--------CKQPIDLSPGDLLYYGGVE-WLNISDFLGKIKKGLELHAM-----CFVFKS 1715
            ..||.|        .||      |:||.....: |:       :.||.:.|...     .|:::.
  Fly   797 SMHQISITGFSGDLAKQ------GELLMQDSFQVWI-------ESKKDIRLRMKPKRRHIFLYQK 848

  Fly  1716 AVVFLCKERLRQKKKLMGVSSKNATNEVEIIRYQVLIPVTEVQVRASSAKDMDSHFLWELIHLRS 1780
            ::: |||:           :||:..|: ...:::..:.::::.:..|.:.|.....:|       
  Fly   849 SLL-LCKQ-----------TSKSGYNK-SSYQFKSDVKMSQIGLTESVSGDAKRFEVW------- 893

  Fly  1781 QLQRRSEKVYVLSNSTADFRNAFLKTIR-------------QIIRESVRNMSIPMKN 1824
             |:.|.| ||.|..||...:..::..|:             ||.|.::|:.|:..|:
  Fly   894 -LKGRQE-VYTLQASTIGVKEMWVAEIKRVLFNQLEKLKGDQIARYNIRHQSLWQKS 948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413 19/90 (21%)
PDZ_signaling 1221..1308 CDD:238492 18/117 (15%)
RhoGEF 1456..1647 CDD:238091 53/198 (27%)
PH2_Tiam1_2 1650..1823 CDD:269957 36/199 (18%)
PH 1693..1812 CDD:278594 24/136 (18%)
CG30440NP_610172.1 RhoGEF 622..796 CDD:214619 52/192 (27%)
PH-like 802..925 CDD:302622 29/157 (18%)
PH 829..922 CDD:278594 22/114 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462270
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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