DRSC/TRiP Functional Genomics Resources

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Protein Alignment sif and Vav2

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:XP_006497917.1 Gene:Vav2 / 22325 MGIID:102718 Length:878 Species:Mus musculus


Alignment Length:590 Identity:124/590 - (21%)
Similarity:223/590 - (37%) Gaps:173/590 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1450 LTDAEKLRKVVMELVDTERTYVKHLNNLLEHYLEPMKRETFLSNAEINALFGNIHEIVTFQRQFL 1514
            :|:.:|....::|:.:||..|.:.|.::.::|:.|::  ..||.|::.|:|.|:.:::.....||
Mouse   193 MTEDDKRSCCLLEIQETEAKYYRTLEDIEKNYMGPLR--LVLSPADMAAVFINLEDLIKVHHSFL 255

  Fly  1515 QNLEESLDLEPDFNKFEHCGQFRNVLFAIGS----AFLYYVNHFKLYSSFCASHSKAQKVLHPNE 1575
            :.::.|                   :.|.||    .||.:.....:|..:|:....||..|:   
Mouse   256 RAIDVS-------------------MMAGGSTLAKVFLEFKERLLIYGEYCSHMEHAQSTLN--- 298

  Fly  1576 GNHALQEFLAARNPKQQH-----------SSTLESYLIKPIQRILKYPLLLQQMRNLTDTRADEH 1629
                  :.||:|...:|.           ...|:..|:.|:||:|||.|||:::.:.:..| .|.
Mouse   299 ------QLLASREDFRQKVEECTLRVQDGKFKLQDLLVVPMQRVLKYHLLLKELLSHSADR-PER 356

  Fly  1630 VHLCEALKGMEKVAEHINEMQRIHE------EYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGV 1688
            ..|.|||:.|:.:|.:|||::|..|      |:....::|..:.::..:..||   |:       
Mouse   357 QQLKEALEAMQDLAMYINEVKRDKETLKKISEFQCSIENLQVKLEEFGRPKID---GE------- 411

  Fly  1689 EWLNISDFLGKIKKGLELHAMCFVFKSAVVFLCKER--LRQKKKLMGVSSKNATNEVEIIRYQVL 1751
              |.:...:...|:...|    |:| ..||.:||.:  ..:.|:::.:.....|::         
Mouse   412 --LKVRSIVNHTKQDRYL----FLF-DKVVIVCKRKGYSYELKEVIELLFHKMTDD--------- 460

  Fly  1752 IPVTEVQVRASSAKDMDSHFLWE----LIHLRSQLQRRSEKVYVLSNSTADFRNAFLKTIRQIIR 1812
             |:....::.|..|      :|.    ||||:.:               ..|: .|.|| ..:.|
Mouse   461 -PMHNKDIKKSHGK------MWSYGFYLIHLQGK---------------QGFQ-FFCKT-EDMKR 501

  Fly  1813 ESVRNMSIPMKNFGGSSGSVSGHSSQ------------------GMGSMGYPGNSQTLERPKQQI 1859
            :.:....:.|.|......:.:.||.|                  |....||......:...|:.:
Mouse   502 KWMEQFEMAMSNIKPDKANANHHSFQMYTFDKTTNCKACKMFLRGTFYQGYLCTRCGVGAHKECL 566

  Fly  1860 TIVHGSHTLGKPKKKSGSQRHSAGNIDYDNLSGSQEADDLPPSVGVVHYASGHTHGQQMQPAGFR 1924
            .::       .|.|.|     |..::|      :..|...|..|.|.:|     ||....|    
Mouse   567 EVI-------PPCKMS-----SPADVD------APGAGPGPKMVAVQNY-----HGNPAPP---- 604

  Fly  1925 GRSKTV-----GDVTEITCSSPEPHQQQQQQQQQQQQLMQQGHAHAHP----HPHPHPREPPP-- 1978
              .|.|     |||.|:....|:       ....:.:|:|...:...|    .|.|....||.  
Mouse   605 --GKPVLTFQTGDVIELLRGDPD-------SPWWEGRLVQTRKSGYFPSSSVKPCPVDGRPPTGR 660

  Fly  1979 PPIRQ 1983
            ||.|:
Mouse   661 PPSRE 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413
PDZ_signaling 1221..1308 CDD:238492
RhoGEF 1456..1647 CDD:238091 49/205 (24%)
PH2_Tiam1_2 1650..1823 CDD:269957 31/184 (17%)
PH 1693..1812 CDD:278594 22/124 (18%)
Vav2XP_006497917.1 CAMSAP_CH 18..103 CDD:314792
RhoGEF 202..375 CDD:214619 50/203 (25%)
PH_Vav 389..516 CDD:269930 30/176 (17%)
C1 524..571 CDD:237996 7/53 (13%)
SH3_VAV2_1 590..649 CDD:212913 16/76 (21%)
SH2_Vav2 667..769 CDD:198269
SH3_VAV2_2 819..876 CDD:212910
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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