DRSC/TRiP Functional Genomics Resources

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Protein Alignment sif and Vav1

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:NP_035821.3 Gene:Vav1 / 22324 MGIID:98923 Length:845 Species:Mus musculus


Alignment Length:612 Identity:126/612 - (20%)
Similarity:231/612 - (37%) Gaps:151/612 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1414 EIENLLKTAEQETRKSSPTGSVTSSVSTTALTPSRQLTDAEKLRKVVMELVDTERTYVKHLNNLL 1478
            |.|:|....|.|..:..........:.:....|  ::|:.:|....:.|:..||..|...|.::.
Mouse   155 EDEDLYDCVENEEAEGDEIYEDLMRLESVPTPP--KMTEYDKRCCCLREIQQTEEKYTDTLGSIQ 217

  Fly  1479 EHYLEPMKRETFLSNAEINALFGNIHEIVTFQRQFLQNLEESLDLEPDFNKFEHCGQFRNVLFAI 1543
            :|:::|::|  ||...::..:|.||.|:.:....||:.|:::|           .|.....|:.:
Mouse   218 QHFMKPLQR--FLKPQDMETIFVNIEELFSVHTHFLKELKDAL-----------AGPGATTLYQV 269

  Fly  1544 GSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNHALQEFLAARNPKQ-------QHSS----TL 1597
               |:.|...|.:|..:|:....|.|        | |.:...||...|       |.::    ||
Mouse   270 ---FIKYKERFLVYGRYCSQVESASK--------H-LDQVATAREDVQMKLEECSQRANNGRFTL 322

  Fly  1598 ESYLIKPIQRILKYPLLLQQM-RNLTDTRADEHVHLCEALKGMEKVAEHINEMQRIHEEYGAI-- 1659
            ...|:.|:||:|||.||||:: ::..|....|::.|  ||..|..:|:.:||::|.:|....|  
Mouse   323 RDLLMVPMQRVLKYHLLLQELVKHTQDATEKENLRL--ALDAMRDLAQCVNEVKRDNETLRQITN 385

  Fly  1660 ----FDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKKGLELHAMCFVFKSAVVFL 1720
                .::|.:......:..||   |:|.             :..:::..:.....|:...|:: :
Mouse   386 FQLSIENLDQSLANYGRPKID---GELK-------------ITSVERRSKTDRYAFLLDKALL-I 433

  Fly  1721 CKERLRQKKKLMGVSSKNATNEVEIIRYQVLIPVT--EVQVRASSAKDMDSHFLWELIHLRSQLQ 1783
            ||.|        |.|            |.:...|.  ..|||..|:.:.|:             :
Mouse   434 CKRR--------GDS------------YDLKASVNLHSFQVRDDSSGERDN-------------K 465

  Fly  1784 RRSEKVYVLSNSTADFRNAFLKTIRQIIRESVRNMSIPMKNFGGSSGSVSGHSSQ---------- 1838
            :.|....::.:..|.....|.|| |::.::.:....:.:.|....:.:.:||..|          
Mouse   466 KWSHMFLLIEDQGAQGYELFFKT-RELKKKWMEQFEMAISNIYPENATANGHDFQMFSFEETTSC 529

  Fly  1839 --------GMGSMGY-------PGNSQTLER--PKQQITIVHG---SHTLGKPKKKSGSQRHSAG 1883
                    |....||       |.:.:.|.|  |..:    ||   :.|:.|.|....:|.....
Mouse   530 KACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPCGR----HGQDFAGTMKKDKLHRRAQDKKRN 590

  Fly  1884 NIDYDNLSGSQEADDLPPSVGVVHYASGHTHGQQMQPAGFRGRSKTVGDVTEITCSSPEPHQQQQ 1948
            .:....:...||...:||..|    |.|..  .::.|          ||:.|:|.:..| |...:
Mouse   591 ELGLPKMEVFQEYYGIPPPPG----AFGPF--LRLNP----------GDIVELTKAEAE-HNWWE 638

  Fly  1949 QQQQQQQQLMQQGHAHAHPHPHPHPRE 1975
            .:.....::........||:.|..|::
Mouse   639 GRNTATNEVGWFPCNRVHPYVHGPPQD 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413
PDZ_signaling 1221..1308 CDD:238492
RhoGEF 1456..1647 CDD:238091 53/202 (26%)
PH2_Tiam1_2 1650..1823 CDD:269957 28/180 (16%)
PH 1693..1812 CDD:278594 20/120 (17%)
Vav1NP_035821.3 CH 18..102 CDD:320720
RhoGEF 195..371 CDD:238091 53/202 (26%)
PH_Vav 385..508 CDD:269930 26/173 (15%)
C1_1 516..567 CDD:278556 9/54 (17%)
SH3_VAV1_1 596..658 CDD:212912 15/78 (19%)
SH2_Vav1 665..767 CDD:198268 0/1 (0%)
SH3_VAV1_2 786..839 CDD:212909
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1291
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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