DRSC/TRiP Functional Genomics Resources

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Protein Alignment sif and trio

DIOPT Version :9

Sequence 1:NP_001261446.1 Gene:sif / 43892 FlyBaseID:FBgn0085447 Length:2734 Species:Drosophila melanogaster
Sequence 2:XP_012819807.1 Gene:trio / 100170157 XenbaseID:XB-GENE-922516 Length:3085 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sifNP_001261446.1 WH1 35..144 CDD:214674
PH1_Tiam1_2 860..985 CDD:269937
PH 873..974 CDD:278594
TIAM1_RBD 1141..1219 CDD:176413
PDZ_signaling 1221..1308 CDD:238492
RhoGEF 1456..1647 CDD:238091
PH2_Tiam1_2 1650..1823 CDD:269957
PH 1693..1812 CDD:278594
trioXP_012819807.1 SEC14 64..199 CDD:214706
SPEC 215..440 CDD:238103
SPEC 336..561 CDD:238103
SPEC 562..778 CDD:238103
SPEC 782..1009 CDD:238103
SPEC 903..1132 CDD:238103
SPEC 1138..1238 CDD:197544
RhoGEF 1289..1459 CDD:238091
PH1_Kalirin_Trio_like 1466..1588 CDD:270060
SH3_Kalirin_1 1654..1713 CDD:212786
SH3-RhoG_link 1710..1967 CDD:293215
RhoGEF 1965..2138 CDD:238091
PH2_Kalirin_Trio_p63RhoGEF 2143..2281 CDD:270061
SH3_Kalirin_2 2543..2601 CDD:212787
I-set 2673..2764 CDD:254352
Ig 2687..2764 CDD:299845
STKc_Trio_C 2776..3038 CDD:271015
S_TKc 2784..3038 CDD:214567
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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