DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ret and kdrl

DIOPT Version :9

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_571547.1 Gene:kdrl / 796537 ZFINID:ZDB-GENE-000705-1 Length:1301 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 PKc_like 770..1049 CDD:304357
TyrKc 771..1042 CDD:197581
kdrlNP_571547.1 IG_like 47..120 CDD:214653
IG_like 228..319 CDD:214653
Ig 236..321 CDD:299845
IG_like 338..415 CDD:214653
Ig 343..415 CDD:299845
Ig 441..533 CDD:143165
IG_like 553..631 CDD:214653
I-set 646..728 CDD:254352
Ig 659..725 CDD:143165
PKc_like 800..1141 CDD:304357
Pkinase_Tyr 808..1134 CDD:285015
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1158..1178
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1265..1291
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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