DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and Frk

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_077344.1 Gene:Frk / 79209 RGDID:621423 Length:506 Species:Rattus norvegicus


Alignment Length:302 Identity:114/302 - (37%)
Similarity:164/302 - (54%) Gaps:24/302 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   763 KWEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTVAVKMLKKGSNSVEYMALLSEFQLLQ 827
            :||..|..:||...||.|:||:|.:|...      ..|.||||.||.|  |::....|.|.|:::
  Rat   227 QWEIDRNSIQLLKRLGSGQFGEVWEGLWN------NTTPVAVKTLKPG--SMDPNDFLREAQIMK 283

  Fly   828 EVSHPNVIKLLGACTSSEAPLLIIEYARYGSLRSYLRLSRKIECAGVDFADGVEPVNVKMVLTFA 892
            .:.||.:|:|...||..:...:|.|..|:|||:.||:            .||...:.:...:..|
  Rat   284 SLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQ------------NDGGSKIRLTQQVDMA 336

  Fly   893 WQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTR--DVYEDDAYLKRSRDRVPVKWM 955
            .|:..|||||.....:||||||||||:.:..|.|::||||.|  .|..:|.|..:...::||||.
  Rat   337 AQVASGMAYLESQNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDIYESKHEIKLPVKWT 401

  Fly   956 APESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEAVYSI 1020
            |||::..:.::.||||||||:|.:|:||.|..||.|:....:..:|...||:.:|.||.|..|||
  Rat   402 APEAIRTNKFSIKSDVWSFGILLYEIITYGKMPYSGMTGAQVIHMLGQNYRLPQPSNCPEQFYSI 466

  Fly  1021 VRTCWADEPNGRPSFKFLASEFEKLLGNNAKYIDLETNAVSN 1062
            :..||..||..||:|:.|..:.|.....::.|.|  ||...|
  Rat   467 MMECWNVEPKQRPTFETLHWKLEDYFEPDSSYSD--TNNFIN 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 106/280 (38%)
FrkNP_077344.1 SH3_Src_like 48..105 CDD:212779
SH2_Src_Frk 113..208 CDD:199831
PTKc_Frk_like 226..495 CDD:270653 109/287 (38%)
Blue background indicates that the domain is not in the aligned region.

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