DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and blk

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:XP_017208000.1 Gene:blk / 567764 ZFINID:ZDB-GENE-040724-106 Length:501 Species:Danio rerio


Alignment Length:373 Identity:115/373 - (30%)
Similarity:176/373 - (47%) Gaps:70/373 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   713 LLIAQRKMLQRRLGKQSMTT------SSKQALPESG------------GGDFALMP------LQS 753
            ||:|........|.::|.||      |.:.:.||.|            .|.:.:.|      ||.
Zfish   133 LLLAPGNKPGSFLVRESETTKGAFSLSIRDSTPEQGDVVKHYKIRALDNGGYYISPSTSFSSLQE 197

  Fly   754 GFRFESGDA-----------------------KWEFPREKLQLDTVLGEGEFGQVLKGFATEIAG 795
            ..::.|..|                       :||.|||.|:|...||.|:||:|..||      
Zfish   198 LVKYYSRTADGLCQRLGNPCKSTAPQRPWAQDEWEIPRETLKLVKKLGAGQFGEVWMGF------ 256

  Fly   796 LPGITTVAVKMLKKGSNSVEYMALLSEFQLLQEVSHPNVIKLLGACTSSEAPLLIIEYARYGSLR 860
            ......||:|.||:|  ::|..|.|.|..|::::.|..::| |.|..:.|...::.||...|||.
Zfish   257 YKNNQKVAIKTLKEG--TMEPEAFLQEANLMKQLQHERLVK-LHAVVTREPIYIVTEYMANGSLL 318

  Fly   861 SYLRLSRKIECAGVDFADGVEPVNVKMVLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKIC 925
            .:|:            .|....:.:..::....||.:||||:.....:||||.|.|:|:::...|
Zfish   319 DFLK------------TDDGHKLKLSKLIDMTAQIAEGMAYIERKNYIHRDLRAANILVSETLHC 371

  Fly   926 KISDFGLTRDVYEDDAYLKRSRDRVPVKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYP 990
            ||:||||.|.:  :..|..:...:.|:||.|||::....:|.||||||||:|..|::|.|..|||
Zfish   372 KIADFGLARII--ETEYTAQEGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRVPYP 434

  Fly   991 GIAPQNLWSLLKTGYRMDRPENCSEAVYSIVRTCWADEPNGRPSFKFL 1038
            |:....:...|...|||..|:.|...:|.|:..||.::|..||:|::|
Zfish   435 GMTNPEVIRNLDRNYRMPCPDACPGELYDIMTKCWMEKPEDRPTFEYL 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 93/269 (35%)
blkXP_017208000.1 SH3_Blk 58..111 CDD:212942
SH2_Src_family 116..216 CDD:199827 17/82 (21%)
PTKc_Lck_Blk 230..492 CDD:270652 98/276 (36%)
Blue background indicates that the domain is not in the aligned region.

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