DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and zap70

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001006825.1 Gene:zap70 / 448557 XenbaseID:XB-GENE-956409 Length:609 Species:Xenopus tropicalis


Alignment Length:371 Identity:105/371 - (28%)
Similarity:169/371 - (45%) Gaps:58/371 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   682 GVLNVAGFECDRSCMFFVITC---PLLFVLLLLCLLIAQRKMLQRRLGKQSMTTSSKQALPESGG 743
            |::.|....|..||.|.:...   |.|            .|:.|........|       ||...
 Frog   245 GIMAVLKESCPNSCTFSIAPAAAPPSL------------PKIRQAASNSDGYT-------PEPFI 290

  Fly   744 GDFALMPLQSGFRFES--------GDAKWEFPREKLQLDTV-LGEGEFGQVLKGF----ATEIAG 795
            |...::|:.:.. :||        .:.|....||.|.:|.| ||.|.||.|.||.    ..:|  
 Frog   291 GKSRILPMDTSV-YESPYSDPEELKERKLFVKRELLLIDEVELGSGNFGCVKKGVYKLKKRQI-- 352

  Fly   796 LPGITTVAVKMLKKGSNSVEYMALLSEFQLLQEVSHPNVIKLLGACTSSEAPLLIIEYARYGSLR 860
                 .||:|:||..........::.|.:::.::.:|.:::::|.| .:|..:|::|.|..|.|.
 Frog   353 -----DVAIKVLKVQDEKNVRDEMMKEAEIMHQLDNPYIVRMIGVC-EAENLMLVMEMASGGPLN 411

  Fly   861 SYLRLSRKIECAGVDFADGVEPVNVKMVLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKIC 925
            .:|...:.:             :.:..::....|:..||.||.....|||||||||||:.:....
 Frog   412 KFLGAKKDV-------------IPMSNIVELMHQVSIGMKYLEGKNFVHRDLAARNVLMVNQHYA 463

  Fly   926 KISDFGLTRDVYEDDAYLK-RSRDRVPVKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPY 989
            |||||||::.:..||:|.| :|..:.|:||.|||.:....::|:|||||:|:..||..|.|..||
 Frog   464 KISDFGLSKALAADDSYYKAKSFGKWPLKWYAPECINYRKFSSRSDVWSYGITMWEAFTYGQKPY 528

  Fly   990 PGIAPQNLWSLLKTGYRMDRPENCSEAVYSIVRTCWADEPNGRPSF 1035
            ..:....:.|.::...|:..|..|...:|.::..||..:...||:|
 Frog   529 KKLKGTEVMSFIERNERLACPAGCPPEMYQVMLDCWIFKMEDRPNF 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 85/272 (31%)
zap70NP_001006825.1 SH2_N-SH2_Zap70_Syk_like 8..111 CDD:198191
SH2_C-SH2_Zap70 152..256 CDD:198265 3/10 (30%)
Protein Kinases, catalytic domain 321..589 CDD:473864 87/275 (32%)
Blue background indicates that the domain is not in the aligned region.

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