DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ret and drl

DIOPT Version :9

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001260566.1 Gene:drl / 44355 FlyBaseID:FBgn0015380 Length:645 Species:Drosophila melanogaster


Alignment Length:592 Identity:147/592 - (24%)
Similarity:228/592 - (38%) Gaps:148/592 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   498 TWIDQQRLSHVR------VINVHLVHGRPENTSCELKVKSRSQTCAQIKYQSQCVRYCG-----L 551
            ||....:.|..|      .|||.::..|..|.:..|..| |.:.|.:.:..|....|..     |
  Fly   112 TWGIALKCSGTRNAEVTVTINVEVILDRATNNNTNLIFK-RKKICLREEQDSAHEEYDDDDLDLL 175

  Fly   552 ATG----GGSCQWRGSNSAMFGTRYGSCVPESRYCPDHVCDPLEELNPMACPQDCTPAGRIVGPH 612
            .|.    ||...:...|.                  :||                     :...|
  Fly   176 QTARKGHGGDIHYVDRND------------------EHV---------------------VANGH 201

  Fly   613 SSNENKRGIYSASGTCICEDNGKCSCAPLDEEPKMKKPRKRKNETEAEPLLGVRRGTPPNQPLQD 677
            .:.|.:|.:.:.|..    ..|....:..|.:|.::           |.|:      ||...|..
  Fly   202 QAPEKQRPVVTESPV----GRGNSGGSKRDFDPMLR-----------ENLV------PPASGLVT 245

  Fly   678 PMLLGVLNVAGFECDRSCMFFVITCPLLFVLLLLCLLIAQRKMLQRRLGKQSMTTSSKQALP--- 739
            .::.|:|.:.                |:..|:|:..............|...:.|||.|.||   
  Fly   246 LIVGGILALV----------------LVSTLILIAYCAKGPSKRHPSNGVHLIKTSSFQRLPTIS 294

  Fly   740 ESGGGDFALMP---------LQSGFRFESGDAKWEFPRE---------KLQLDTVLGEGEFGQVL 786
            .:......:.|         |...|| |......||.|.         :::|..::.||.||::.
  Fly   295 STAHNSIYVCPSTITPTYATLTRPFR-EYEHEPEEFNRRLQELTVQKCRVRLSCLVQEGNFGRIY 358

  Fly   787 KGFATEIAGLPGITTVAVKMLKKGSNSVEYMALLSEFQLLQEVSHPNVIKLLGACTSSEAPLLII 851
            :|...:      ...|.||.:.:.::.::...||.|..:|.|.|||||:.:||......|...::
  Fly   359 RGTYND------CQEVLVKTVAQHASQLQVNLLLQESMMLYEASHPNVLSVLGISIEDYATPFVL 417

  Fly   852 EYARYGS---LRSYLRLSRKIECAGVDFADGVEPVNVKMVLT-----FAWQICKGMAYLSELKLV 908
             ||..||   |:|:|:                :|...:.|.|     ...|:...|.:|....::
  Fly   418 -YAATGSVRNLKSFLQ----------------DPSYARSVTTIQTVLMGSQLAMAMEHLHNHGVI 465

  Fly   909 HRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVPVKWMAPESLADHVYTSKSDVWS 973
            |:|:||||.::.|....|::|..|:||::..|.......:..|:||::.|:|....|...|||||
  Fly   466 HKDIAARNCVIDDQLRVKLTDSALSRDLFPGDYNSLGDGEYRPIKWLSLEALQKSHYNEGSDVWS 530

  Fly   974 FGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEAVYSIVRTCWADEPNGRPSFKFL 1038
            ||||.||:.|||..||..|.|..:...||.|||:.:|.||.:.:::|:..|||..|..||||..|
  Fly   531 FGVLMWEMCTLGKLPYAEIDPYEMEHYLKDGYRLAQPFNCPDELFTIMAYCWASMPAERPSFSQL 595

  Fly  1039 ---ASEF 1042
               .|||
  Fly   596 QICLSEF 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 PKc_like 770..1049 CDD:304357 93/284 (33%)
TyrKc 771..1042 CDD:197581 91/281 (32%)
drlNP_001260566.1 WIF 21..157 CDD:128745 13/45 (29%)
PTK_Ryk 336..606 CDD:270639 93/290 (32%)
Pkinase_Tyr 343..599 CDD:285015 90/278 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45455305
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.