DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and yes1

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001013288.2 Gene:yes1 / 407620 ZFINID:ZDB-GENE-050126-1 Length:546 Species:Danio rerio


Alignment Length:287 Identity:112/287 - (39%)
Similarity:166/287 - (57%) Gaps:26/287 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   760 GDAK--WEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTVAVKMLKKGSNSVEYMALLSE 822
            |.||  ||.|||.|:|:..||:|.||:|..|...      |.|.||:|.||.|:.|.|  |.|.|
Zfish   267 GLAKDAWEIPRESLRLELKLGQGCFGEVWMGTWN------GTTKVAIKTLKPGTMSPE--AFLQE 323

  Fly   823 FQLLQEVSHPNVIKLLGACTSSEAPLLII-EYARYGSLRSYLRLSRKIECAGVDFADGVEPVNVK 886
            .|:::::.|..::.|....  ||.|:.|: ||...|||..:|:     |..|       :.:.:.
Zfish   324 AQIMKKLRHDKLVPLYAVV--SEEPIYIVTEYMGKGSLLDFLK-----EGEG-------KYLKLP 374

  Fly   887 MVLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVP 951
            .::..|.||..|||::..:..:||||.|.|:|:.|..:|||:||||.| :.||:.|..|...:.|
Zfish   375 QLVDMAAQIADGMAFIERMNYIHRDLRAANILVGDNLVCKIADFGLAR-LIEDNEYTARQGAKFP 438

  Fly   952 VKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEA 1016
            :||.|||:.....:|.||||||||:|..||:|.|..||||:..:.:...::.||||..|:.|.|:
Zfish   439 IKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQGCPES 503

  Fly  1017 VYSIVRTCWADEPNGRPSFKFLASEFE 1043
            ::.::|.||..||:.||:|:::.|..|
Zfish   504 LHEMMRLCWKKEPDERPTFEYIQSFLE 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 104/275 (38%)
yes1NP_001013288.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..58
SH3_Yes 97..154 CDD:212940
SH2_Src_family 157..256 CDD:199827
PTKc_Yes 267..545 CDD:270654 112/287 (39%)
Blue background indicates that the domain is not in the aligned region.

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