DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ret and fyna

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001315092.1 Gene:fyna / 373872 ZFINID:ZDB-GENE-030903-5 Length:537 Species:Danio rerio


Alignment Length:298 Identity:111/298 - (37%)
Similarity:168/298 - (56%) Gaps:29/298 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   749 MPLQSGFRFESGDAKWEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTVAVKMLKKGSNS 813
            ||..:....::.|. ||.|||.|||...||.|:||:|..|...      |.|.||||.||.|:.|
Zfish   250 MPRLADLSVKTKDV-WEIPRESLQLIKRLGNGQFGEVWMGTWN------GNTKVAVKTLKPGTMS 307

  Fly   814 VEYMALLSEFQLLQEVSHPNVIKLLGACTSSEAPLLII-EYARYGSLRSYLRLSRKIECAGVDFA 877
            .|  :.|.|.|:::::.|..:::|....  ||.|:.|: ||...|||..:|:             
Zfish   308 PE--SFLEEAQIMKKLRHDKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLK------------- 355

  Fly   878 DGVEPVNVKM--VLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDD 940
            || |...:|:  ::..|.|:..||||:..:..:||||.:.|:|:.|..:|||:||||.| :.||:
Zfish   356 DG-EGRGLKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDSLVCKIADFGLAR-LIEDN 418

  Fly   941 AYLKRSRDRVPVKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGY 1005
            .|..|...:.|:||.|||:.....:|.||||||||:|..||:|.|..||||:..:.:...::.||
Zfish   419 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGY 483

  Fly  1006 RMDRPENCSEAVYSIVRTCWADEPNGRPSFKFLASEFE 1043
            ||..|::|..:::.::..||..:|..||:|::|.:..|
Zfish   484 RMPCPQDCPSSLHELMLQCWKRDPEERPTFEYLQAFLE 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 103/277 (37%)
fynaNP_001315092.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 13..34
SH3_Fyn_Yrk 85..140 CDD:212939
SH2_Src_Fyn_isoform_a_like 145..245 CDD:198281
PTKc_Fyn 261..534 CDD:270655 109/287 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.