DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ret and tor

DIOPT Version :9

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_476762.1 Gene:tor / 35717 FlyBaseID:FBgn0003733 Length:923 Species:Drosophila melanogaster


Alignment Length:539 Identity:150/539 - (27%)
Similarity:222/539 - (41%) Gaps:181/539 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   682 GVLNVAGFECDR-------------SCMFFVITCPLLFVLLLLCLLIAQRKMLQRRLGKQSMTTS 733
            |..||:|...|:             ..:.|:|. |:..:|:|..|...:|    .|...|::...
  Fly   374 GGKNVSGLTLDKVHRGVLLSEGNMVKLVLFIIV-PICCILMLCSLTFCRR----NRSEVQALQMD 433

  Fly   734 SKQA--------LPESGGGDFALMPLQSGFRFESGDAKWEFPREKLQLDTVLGEGEFGQVLKGFA 790
            :|.|        |.:|.|   .|:.|.:....|..| :.|.....:.|..|||||.||.|.:|..
  Fly   434 AKDAKASEFHLSLMDSSG---LLVTLSANESLEVMD-ELEVEPHSVLLQDVLGEGAFGLVRRGVY 494

  Fly   791 TEIAGLPGITTVAVKMLKKGSNSVEYMALLSEFQLLQEV-SHPNVIKLLGACTS-SEAPLLIIEY 853
            .:       ..||||:||...|..:..|...|.|:|:.| .|||::.::|..|. |...:|:|||
  Fly   495 KK-------RQVAVKLLKDEPNDEDVYAFKCEIQMLKAVGKHPNIVGIVGYSTRFSNQMMLLIEY 552

  Fly   854 ARYGSLRSYLR-------------LSRKIECAGVD-----------FADGVEPVNVKM------- 887
            ...|||:::||             |.:.:| ..||           ..|.:|.:|..|       
  Fly   553 CSLGSLQNFLREEWKFRQEQNAIGLKKNLE-QNVDNRRFNRLPRNSIHDRIEDINNSMLSTVEEE 616

  Fly   888 ----------------------------------------------------------------- 887
                                                                             
  Fly   617 SESDQTHSSRCETYTLTRITNAADNKGYGLEDIENIGGSYIPKTAEAPKDRPKRKLKPQPKKDSK 681

  Fly   888 ------------------------------------VLTFAWQICKGMAYLSELKLVHRDLAARN 916
                                                :|..|.|:..||.:|::.|:|||||||||
  Fly   682 QDFKSDNKKRIFENKEYFDCLDSSDTKPRIPLKYADLLDIAQQVAVGMEFLAQNKVVHRDLAARN 746

  Fly   917 VLLADGKICKISDFGLTRDVYEDDAYLKR-SRDRVPVKWMAPESLADHVYTSKSDVWSFGVLCWE 980
            ||::..:..||:||||:||||.::.|.|. ...::|:||:|.|||...||||:|||||||||.:|
  Fly   747 VLISVDRSIKIADFGLSRDVYHENVYRKSGGSGKLPIKWLALESLTHQVYTSQSDVWSFGVLLYE 811

  Fly   981 LITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEAVYSIVRTCWADEPNGRPSFKFLASEFEKL 1045
            :.|||..|||.::|.:|..||:.|:||.|||.|::.::|::.:||:..|:.||:|..|......:
  Fly   812 ITTLGGMPYPSVSPSDLLQLLRQGHRMKRPEGCTQEMFSLMESCWSSVPSHRPTFSALKHRLGGM 876

  Fly  1046 LGNNAKYIDLETNAVSNPL 1064
            :        |.||.|...|
  Fly   877 I--------LATNDVPERL 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 PKc_like 770..1049 CDD:304357 121/413 (29%)
TyrKc 771..1042 CDD:197581 121/405 (30%)
torNP_476762.1 FN3 199..261 CDD:214495
STYKc 475..873 CDD:214568 121/405 (30%)
PTKc 479..873 CDD:270623 120/401 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24416
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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