DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and Abl1

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001094320.1 Gene:Abl1 / 311860 RGDID:1584969 Length:1143 Species:Rattus norvegicus


Alignment Length:435 Identity:141/435 - (32%)
Similarity:211/435 - (48%) Gaps:47/435 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   763 KWEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTVAVKMLKKGSNSVEYMALLSEFQLLQ 827
            |||..|..:.:...||.|::|:|.:|...:.:     .|||||.||:.:..||  ..|.|..:::
  Rat   253 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYS-----LTVAVKTLKEDTMEVE--EFLKEAAVMK 310

  Fly   828 EVSHPNVIKLLGACTSSEAPLLIIEYARYGSLRSYLRLSRKIECAGVDFADGVEPVNVKMVLTFA 892
            |:.|||:::|||.||......:|.|:..||:|..|||     ||       ..:.|:..::|..|
  Rat   311 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR-----EC-------NRQEVSAVVLLYMA 363

  Fly   893 WQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVPVKWMAP 957
            .||...|.||.:...:||||||||.|:.:..:.|::||||:| :...|.|...:..:.|:||.||
  Rat   364 TQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR-LMTGDTYTAHAGAKFPIKWTAP 427

  Fly   958 ESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEAVYSIVR 1022
            ||||.:.::.|||||:||||.||:.|.|.||||||....::.||:..|||:|||.|.|.||.::|
  Rat   428 ESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMR 492

  Fly  1023 TCWADEPNGRPSFKFLASEFEKLLGNNAKYIDLETNAVSNPLYCGDDSALITTELGEPESLQHLW 1087
            .||...|:.||||..:...||.:...::...::|.......:.....|.|...||..........
  Rat   493 ACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRGMRGAAGSTLQAPELPTKTRTCRKT 557

  Fly  1088 SPPKIAYD----IHDQATSYDQSEEEMPVTSTAPPGYDLPRPLLDATANGQVLRYENDLRFPLNI 1148
            :..|.|.|    :|.:......:.:..|..|...|..:...|  |.:.|      |::...|.:.
  Rat   558 AEQKDAPDALELLHTKGLGESDALDSEPAVSPLLPRKERGPP--DGSLN------EDERLLPKDK 614

  Fly  1149 RK---SSCTPSYSNMTSEPPATTSLPHYSVPVKRGRSYLDMTNKS 1190
            :.   |:.......|...||            ||..|:.:|..:|
  Rat   615 KTNLFSALIKKKKKMAPTPP------------KRSSSFREMDGQS 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 111/278 (40%)
Abl1NP_001094320.1 SH3_Abl 84..137 CDD:212784
SH2_ABL 142..235 CDD:198189
PTKc_Abl 254..516 CDD:270645 114/281 (41%)
FABD 1019..1143 CDD:197885
Blue background indicates that the domain is not in the aligned region.

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