DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and fgfr1a

DIOPT Version :9

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:XP_009302578.1 Gene:fgfr1a / 30705 ZFINID:ZDB-GENE-980526-255 Length:811 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 PKc_like 770..1049 CDD:304357
TyrKc 771..1042 CDD:197581
fgfr1aXP_009302578.1 Ig 28..116 CDD:416386
Ig strand A 28..31 CDD:409353
Ig strand A' 38..44 CDD:409353
Ig strand B 47..57 CDD:409353
Ig strand C 61..66 CDD:409353
Ig strand C' 69..71 CDD:409353
Ig strand D 76..80 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 94..103 CDD:409353
Ig strand G 106..116 CDD:409353
Ig 142..236 CDD:416386
Ig strand A 142..145 CDD:409353
Ig strand A' 153..158 CDD:409353
Ig strand B 162..170 CDD:409353
Ig strand C 176..181 CDD:409353
Ig strand C' 184..186 CDD:409353
Ig strand D 195..198 CDD:409353
Ig strand E 202..207 CDD:409353
Ig strand F 216..223 CDD:409353
Ig strand G 226..236 CDD:409353
Ig 244..345 CDD:416386
Ig strand A 244..247 CDD:409353
Ig strand A' 251..255 CDD:409353
Ig strand B 263..270 CDD:409353
Ig strand C 274..281 CDD:409353
Ig strand D 296..301 CDD:409353
Ig strand E 311..316 CDD:409353
Ig strand F 324..332 CDD:409353
Ig strand G 335..343 CDD:409353
FGFR3_TM 358..387 CDD:407957
PTKc_FGFR1 452..753 CDD:270678
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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