DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ret and old-1

DIOPT Version :9

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_496130.2 Gene:old-1 / 191737 WormBaseID:WBGene00003862 Length:502 Species:Caenorhabditis elegans


Alignment Length:506 Identity:144/506 - (28%)
Similarity:219/506 - (43%) Gaps:100/506 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   622 YSASGTCICEDNGKCSCAPLDEEPKMKK-PRKR-KNETEAEPLLGVRRGTPPNQPLQDPMLLGVL 684
            ||:.|...|....:.|....:.|..::: ||.. |:||                           
 Worm    11 YSSYGFAHCNTILRSSSLSRNFEDSLRRIPRSTDKDET--------------------------- 48

  Fly   685 NVAGFECD--RSCMFFVITCPLLFVLLLLCLLI-----------AQRK-----MLQRRLGKQSMT 731
               |||..  :..:|.::.|..:.:.:|:|.||           |.|.     :|:.........
 Worm    49 ---GFEDSNVQEVIFILLYCLFVALAILICGLIIFYNSRKRELRANRSRGDEYLLEPTSADHKRR 110

  Fly   732 TSSKQALPE-------SGGGD----------------FALMPLQSGFRFESGDAKWEFPREKLQL 773
            .||....||       ||..|                ..|.|:.....:....|:.|...|.|.:
 Worm   111 NSSNIVPPEPTPYPITSGESDLRQTPSRLSNVECPPELELAPINEKIMYLHYYAEVEINEEDLDI 175

  Fly   774 D--TVLGEGEFGQVLKGFA----TEIAGLPGITTVAVKMLKKGSNSVEYMALLSEFQLLQEV-SH 831
            .  ..||.||||.:.|||.    ::.........||||:.....|.::...:..|.:::..| .|
 Worm   176 SKGRPLGSGEFGIIRKGFLRSKNSKNEEKESRLEVAVKLPLNEYNQIQQELIYDELKVMCAVGKH 240

  Fly   832 PNVIKLLGACTSSEAPLLIIEYARYGSLRSYLRLSRKIECAGVDFADGVEPVNVKMV--LTFAWQ 894
            ||::.|:|..|..|..:::.|:...|.|.|:|| ..:|......:....|..::.:|  |:||:|
 Worm   241 PNILALVGGITFGERKMIVSEFVENGDLLSFLR-DNRIYFTNDQWTLETEQDSLSLVDLLSFAFQ 304

  Fly   895 ICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDR-VPVKWMAPE 958
            |.|||.||..:..||||||.||||:...:|.:|:||||.|.....|.|..:|.|. :|:.|||||
 Worm   305 IAKGMEYLIHVPCVHRDLALRNVLIKKNRIIRIADFGLARRHKNKDYYKTQSVDTPLPIHWMAPE 369

  Fly   959 SLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQN----LW----SLLKTGYRMDRPENCSE 1015
            |:...::|.||||||:||..:||.:||.|||..:...:    .|    |.|..|.|:.:|.:...
 Worm   370 SIDKLLFTQKSDVWSYGVCLYELFSLGKSPYENVIKYDQRDFYWKYVLSYLNEGKRLAQPAHADA 434

  Fly  1016 AVYSIVRTCWADEPNGRPSFKFLASEFEKLL--GNNAKYIDL------ETN 1058
            .:|::::.||..:.|.|.:|......|||.|  .:|..::||      |||
 Worm   435 EIYNVMKLCWDLDMNSRTTFLDCIEFFEKELKTTSNEYFLDLTRKLRSETN 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 PKc_like 770..1049 CDD:304357 103/298 (35%)
TyrKc 771..1042 CDD:197581 99/288 (34%)
old-1NP_496130.2 TyrKc 175..461 CDD:197581 98/286 (34%)
PTKc 179..462 CDD:270623 98/283 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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