DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and Y38H6C.20

DIOPT Version :9

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_507962.2 Gene:Y38H6C.20 / 189700 WormBaseID:WBGene00012632 Length:736 Species:Caenorhabditis elegans


Alignment Length:828 Identity:193/828 - (23%)
Similarity:302/828 - (36%) Gaps:230/828 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   393 ALPLRARQHRIFESEEFNGDSA-----------------GR-----SLSPPTVDY---DKDVSVY 432
            ||..|.||    |:||..|..|                 ||     :.|..|:|:   ..||...
 Worm    41 ALKGRIRQ----ETEEEGGPEAKLAVMAVVYMDGLPYEEGRWDVLKNESSLTIDWLPMSHDVIES 101

  Fly   433 RSAASNFRVVQPDSFLDLMR-----LRSIRFDIVEDKLGAFGITSTSGIVFVKNPQVLEEAPETI 492
            .......:.|.   |:|:.:     :..:.||::..||.:........|...|..::|:..  |.
 Worm   102 SRRPPKLKSVH---FVDVGQETTAIVMELLFDLLNMKLRSTYELRVGSIYDTKCDRMLDLT--TH 161

  Fly   493 YFLNVTW---------------IDQ------QRLSHVRVINVHLVHGRPENTSCELKVKSRSQTC 536
            ..||||:               ||.      .|..|.||:.:.:    ||:...::.:.......
 Worm   162 AALNVTFACERIIGADCRDAIKIDHHPVCNLMRNYHTRVVELKI----PEDPQVDVLISIEKNAH 222

  Fly   537 AQIKYQSQCVRYCGLATGGGSCQWRGSNSAMFGTRYGSCVPE------SRYC-PDHVCDPLEELN 594
            ...|.:...:.|       |.|:   .||.   |..|.||.:      ||:| |:..        
 Worm   223 RLRKMRYFVIFY-------GKCE---ENSK---TDQGECVLDMEKAEISRFCVPNRA-------- 266

  Fly   595 PMACPQDCTPAGRIVGPHSSNENKRGIYSAS---GTCICEDNGKCSCAPLDEEPKMKKPRKRKNE 656
                  :||...|.......|      |.||   |..|        |..||            :.
 Worm   267 ------NCTKYNRKFSLTIEN------YDASVRYGVQI--------CGILD------------HR 299

  Fly   657 TEAEPLLGVRRGTPPNQPLQDPMLLGVLNVAGFE----CD---RSCMFFVITCPLLFVLLLLCLL 714
            .||.|::.   ||  ::...|.:.:...:.|...    .|   |:.:.:...  |.|:|::|.:.
 Worm   300 FEAPPIVA---GT--SKIAADALTVSTKSTASLSVIAPADSLLRTLIGYAFV--LAFLLIILIIF 357

  Fly   715 IAQRKMLQRRLGKQSMTTSSKQALPESGGGDFALMPLQSGFRFESGDAKWEFPREKLQLDTVLGE 779
            |:. |....|..|.:...|           |..||...|...||               |.::|:
 Worm   358 ISY-KCATGRWCKGNTQES-----------DQFLMDENSLTIFE---------------DIIIGK 395

  Fly   780 GEFGQVLKG-FATEIAG---LPGITTVAVK---MLKKGSNSVEYMALLSEFQLLQEVS-HPNVIK 836
            |.||.|..| .:::..|   |.....||||   .|.|...|    ....|.:..:||. |..|:.
 Worm   396 GRFGTVHLGQLSSDWHGPVVLDDQQRVAVKTNRYLDKSRKS----DFFDEIEGAKEVGRHSRVLS 456

  Fly   837 LLGACTSSEAPLLIIEYARYGSLRSYL----RLSRKIECAGVDFADGV---------EPVNVKMV 888
            |:|....:...|.::||...|:|..||    |...:::..||:..:.:         |.:::..:
 Worm   457 LIGTVVKNGNVLHVMEYCSNGNLLDYLIGKRRYMVELQGKGVNLNESLPSLNDIDFDEVISIHDL 521

  Fly   889 LTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVPV- 952
            ...|.|||..|.:|....:||..|.||:|:::.....|::|||        ......:.:..|| 
 Worm   522 YRIASQICTAMMFLGSKSIVHNALCARHVMISSDHNVKLADFG--------SISTPTTPNCTPVE 578

  Fly   953 ---KWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENCS 1014
               ||.|.|.|.....|..||||||||:.||:.|:|..||..:....:..|::.|:|:.:|:.|:
 Worm   579 NQYKWCALELLRGETATCLSDVWSFGVVLWEIFTMGGCPYYNVPDVGIRGLVEKGFRLQKPDGCN 643

  Fly  1015 EAVYSIVRTCWADEPNGRPSFKFLASEFEKLLGNNAKYI--DLETNAVSNPLYCG---DDSALIT 1074
            ..:|.::|..|.|.|..||:|    |:..:.:..:|...  |...|.::....|.   ||    .
 Worm   644 IQIYQLMRETWLDSPTDRPTF----SQISQRISQSATQFSPDASRNFLTISTLCDYYLDD----V 700

  Fly  1075 TELGEPESLQHLWSPPKIAYDIHDQATSYDQSEEEMPVTSTAPPGYDL 1122
            |....|.:.    |.|:.....:|.|....:||..:        ||.|
 Worm   701 TSRSTPATS----SLPRRQQTHYDAAALISESERLL--------GYRL 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 PKc_like 770..1049 CDD:304357 86/303 (28%)
TyrKc 771..1042 CDD:197581 86/295 (29%)
Y38H6C.20NP_507962.2 PKc_like 392..671 CDD:389743 85/294 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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