DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and T25B9.4

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_501994.1 Gene:T25B9.4 / 188882 WormBaseID:WBGene00012010 Length:546 Species:Caenorhabditis elegans


Alignment Length:489 Identity:123/489 - (25%)
Similarity:204/489 - (41%) Gaps:119/489 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   764 WEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTV--AVKMLKK--GSNSVEYMALLSEFQ 824
            |||...::.|...:|:|.:|:|.||..|.     |..|.  |:|.::|  .:.:.:...:::|.:
 Worm   125 WEFKHSQINLIKKVGKGAYGEVFKGTVTR-----GNKTFNGAIKAMRKDLDAGNEKMKEVMAEAR 184

  Fly   825 LLQEVSHPNVIKLLGACTSSEAPLLIIEYARYGSLRSYLRLSRKIECAGVDFADGVEPVNVKMVL 889
            |::.::|||:::..|.....:...::||:...|.|.|||:  :..:...:|..:       :|.:
 Worm   185 LMRSLNHPNIVRCRGIAVLEQPVYIVIEFINGGGLDSYLK--KNSQTLTMDQKN-------RMAI 240

  Fly   890 TFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVPVKW 954
            :.||    |:.::....::|||:||||.|..:..:.|:|||||:|   :...|..:...::|.||
 Worm   241 SAAW----GIEFMHSHDIIHRDIAARNCLYDNKNLVKLSDFGLSR---KGSVYRMKKAMKMPTKW 298

  Fly   955 MAPESLADHVYTSKSDVWSFGVLCWELITL------------------GASP-YPGIAPQNLWSL 1000
            :|||||....::..|||::||||.:|:.|.                  ||.| :...||..|..:
 Worm   299 LAPESLTTFTFSGASDVYTFGVLLYEIYTCQEPYLAVKAGEAKRYILSGAFPNFTKQAPPELNEI 363

  Fly  1001 LKTG-YRMDRPENCSEAVYSIVRTCWAD-----EPNGRPSFKFLASEFEKLLGNNAKYIDLETNA 1059
            :|.. |::|..:..:..|.......|.|     :.|.:|.   :..|..:..||....:|..|..
 Worm   364 VKKSIYQLDPAKRDTMKVIVKKLETWLDVELVLDENEKPD---IDPESNRFNGNMPIRVDSSTKK 425

  Fly  1060 VSNPLYCGDDSALITTELGEPESLQHLWSPPKIAYDIHDQATSYDQSEEEMPVTSTAPPGYDLPR 1124
            :.|...|                     .||                    |.|:|..    ||.
 Worm   426 MRNDTVC---------------------IPP--------------------PETATVA----LPN 445

  Fly  1125 PLLDATANGQVLRYENDLRFPLNIRKSSCTPSYSNMT--------SEPPA--------TTSLPHY 1173
            .|...|.:.   |.:|..:..|. ||...|...|:||        |||||        |.|:.:.
 Worm   446 SLPPITVSA---RSKNSRKSTLK-RKKKKTSKDSSMTTTTTNTNESEPPADGQVISSETMSVANK 506

  Fly  1174 SVPVKRGRSYLDMTNKSLIPDNLDSREFEKHLSK 1207
            .|...:|.| .:|...||......|:|.|..|::
 Worm   507 MVSDAKGGS-PEMLTPSLEELKPSSQENETFLNE 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 80/307 (26%)
T25B9.4NP_501994.1 SH2_Fps_family 9..109 CDD:198224
PTKc 136..387 CDD:270623 73/271 (27%)
Blue background indicates that the domain is not in the aligned region.

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