DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and R11E3.1

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_500644.2 Gene:R11E3.1 / 187810 WormBaseID:WBGene00020003 Length:549 Species:Caenorhabditis elegans


Alignment Length:413 Identity:100/413 - (24%)
Similarity:181/413 - (43%) Gaps:81/413 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   764 WEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTVAVKMLKKGS-NSVEYMALLSEFQLLQ 827
            ||.....::|...||||.:|:|.||.   :........||||::|.|. |.::...:::|.:|::
 Worm   207 WENRHSAVKLGDKLGEGAYGEVRKGV---LHRKNKKLDVAVKLMKGGELNKMKIREMMNEARLMR 268

  Fly   828 EVSHPNVIKLLGACTSSEAPLLIIEYARYGSLRSYLRLSRKIE------CAGVDFADGVEPVNVK 886
            ...|.|:::..|.....:...:::|....|:|.:||:.::..:      |.|.            
 Worm   269 NFKHKNIVRFFGVAVVEQPLYILLELVNGGALNTYLQKNKVSDLELMRMCLGA------------ 321

  Fly   887 MVLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVP 951
                     .:|:.||.....:|||:||||.|.::.|:.|:|||||:   ...:.|...:..::|
 Worm   322 ---------AQGLQYLHANHCIHRDIAARNCLYSNDKVVKLSDFGLS---VVGNQYKLCAAQKLP 374

  Fly   952 VKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEA 1016
            :||:|||::....:|.|:||:|:||:|:|:.:.||.|:.|:......:.:..|..:..||:|.|.
 Worm   375 IKWLAPETITTRFFTPKTDVYSYGVMCFEIFSNGAEPWEGVTNTVTKNNVVNGINLVIPESCPEK 439

  Fly  1017 VYSIV-RTCWADEPNGRPSFKFLASEFEKLLGNNAKYIDLETNAVSNPLYCGDDSALITTELGEP 1080
            ..|.| ...:..:|..|           .::.:.:::|:...|.:.|       :|.::|.|   
 Worm   440 FRSFVHEKIFVVDPKRR-----------VVMDDVSRFIEPIINDMHN-------AAAVSTML--- 483

  Fly  1081 ESLQHLWSPPKIAYDIHDQATSYDQSEEEMPVTSTAPPGYDLPRPLLDATANGQVLRYENDLRFP 1145
                      .:|.|..|    |:|.      ||.|.....:|........|......:||.|  
 Worm   484 ----------NLASDKSD----YNQK------TSDANRSMMVPNLTSSTPRNATNSMKQNDYR-- 526

  Fly  1146 LNIRKSSCTPSYSNMTSEPPATT 1168
               ||:..:|:......:..:.|
 Worm   527 ---RKTRTSPNTGQRAGKKSSQT 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 75/286 (26%)
R11E3.1NP_500644.2 SH2_Fps_family 73..191 CDD:198224
PTKc 218..467 CDD:270623 74/286 (26%)
Blue background indicates that the domain is not in the aligned region.

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