DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and C18H7.4

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_499953.2 Gene:C18H7.4 / 182803 WormBaseID:WBGene00015994 Length:390 Species:Caenorhabditis elegans


Alignment Length:372 Identity:100/372 - (26%)
Similarity:162/372 - (43%) Gaps:89/372 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   717 QRKMLQRRLGKQSMTTSSKQALPESGGGDFALMPLQSGFRFESGDAKWEFPREKLQLDTVLGEGE 781
            ::.:|:|.:.|                |.|.||.....|:.:                  :|.|.
 Worm   102 EKVILKRAIAK----------------GKFQLMHTDVNFKKQ------------------IGSGA 132

  Fly   782 FGQVLKGFATEIAGLPGITTVAVKML-KKGSNSVEYMALLSEFQLLQEVSHPNVIKLLGACTSSE 845
            :|.|.:|...:...:     ||||.| .:|::......::.|.:::|...|||::|..|......
 Worm   133 YGTVYRGRLVKTNAI-----VAVKKLDTEGTDEEGLTDMMKEARVMQLYDHPNIVKFYGYILDDV 192

  Fly   846 APLLIIEYARYGSLRSYLRLSRKIECAGVDFADGVEPVNVKMVLTFAWQICKGMAYLSELKLVHR 910
            ..||::|:...||:...||...:|:            :|.::..|: ...| ||.||.:...:||
 Worm   193 PYLLVLEFCNGGSVEDLLRDKPEIK------------INRRVQYTY-MAAC-GMDYLHKKNCIHR 243

  Fly   911 DLAARNVLLADGKICKISDFGLTR--DVYEDDAYLKRSRDRVPVKWMAPESLADHVYTSKSDVWS 973
            |:|:||.|:.:| :.|::|||:.|  .||:.|  |.:.   :.|:|:|||...:......:||::
 Worm   244 DIASRNCLIHNG-VVKMADFGMCRATAVYKVD--LSKP---LNVRWLAPEVWTNGETRYNTDVYA 302

  Fly   974 FGVLCWE-LITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEAVYSIVRTCWADEPNGRPSFKF 1037
            |||:.|| .||...|||.......:...::.||||..||...:.|.|::..||..:|..||:.:.
 Worm   303 FGVMIWEFFITPYQSPYTEWKGYTVKQKVRGGYRMQPPEGMPKDVASLLAECWNHDPEKRPNAEK 367

  Fly  1038 LASEFEKLLGNNAKYIDLETNAVSNPLYCGDDSALITTELGEPESLQ 1084
            |..:.|.|   |.||                       |.|||..||
 Worm   368 LKEKLEDL---NQKY-----------------------EAGEPSLLQ 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 83/282 (29%)
C18H7.4NP_499953.2 SH2_Fps_family 11..99 CDD:198224
PK_Tyr_Ser-Thr 122..372 CDD:462242 82/292 (28%)
Blue background indicates that the domain is not in the aligned region.

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