DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and Lyn

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001104566.1 Gene:Lyn / 17096 MGIID:96892 Length:512 Species:Mus musculus


Alignment Length:277 Identity:109/277 - (39%)
Similarity:159/277 - (57%) Gaps:21/277 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   764 WEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPGITTVAVKMLKKGSNSVEYMALLSEFQLLQE 828
            ||.|||.::|...||.|:||:|..|:..      ..|.||||.||.|:.||:  |.|.|..|::.
Mouse   240 WEIPRESIKLVKKLGAGQFGEVWMGYYN------NSTKVAVKTLKPGTMSVQ--AFLEEANLMKT 296

  Fly   829 VSHPNVIKLLGACTSSEAPLLIIEYARYGSLRSYLRLSRKIECAGVDFADGVEPVNVKMVLTFAW 893
            :.|..:::|....|..|...:|.|:...|||..:|:            :|....|.:..::.|:.
Mouse   297 LQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLK------------SDEGGKVLLPKLIDFSA 349

  Fly   894 QICKGMAYLSELKLVHRDLAARNVLLADGKICKISDFGLTRDVYEDDAYLKRSRDRVPVKWMAPE 958
            ||.:||||:.....:||||.|.|||:::..:|||:||||.| |.||:.|..|...:.|:||.|||
Mouse   350 QIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLAR-VIEDNEYTAREGAKFPIKWTAPE 413

  Fly   959 SLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAPQNLWSLLKTGYRMDRPENCSEAVYSIVRT 1023
            ::....:|.||||||||:|.:|::|.|..||||....::.|.|..||||.|.|||.:.:|.|::.
Mouse   414 AINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMPRMENCPDELYDIMKM 478

  Fly  1024 CWADEPNGRPSFKFLAS 1040
            ||.::...||:|.:|.|
Mouse   479 CWKEKAEERPTFDYLQS 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 104/271 (38%)
LynNP_001104566.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..45
SH3_Lyn 67..122 CDD:212937
SH2_Src_Lyn 125..225 CDD:198227
PTKc_Lyn 239..510 CDD:270657 109/277 (39%)
Blue background indicates that the domain is not in the aligned region.

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