DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and styk1

DIOPT Version :9

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:NP_001123790.1 Gene:styk1 / 100170540 XenbaseID:XB-GENE-979179 Length:419 Species:Xenopus tropicalis


Alignment Length:402 Identity:118/402 - (29%)
Similarity:192/402 - (47%) Gaps:44/402 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   692 DRSCM-----FFVITCPLLFV---LLLLCLLIAQRKMLQRRLGKQSMTTSSKQALPESGGGDFAL 748
            |:.|:     :.||..|:..:   ::||.:::..|  .:.|...:......:|..|.:|..:.|:
 Frog    20 DQLCIVRTQEYEVIVVPVFLIGVSVILLAIILWLR--YRPRKPDEDDQRQDEQRKPSAGYINHAI 82

  Fly   749 ----MPLQSGFRFESGDAK-WEFPREKLQLDTVL-GEGEFGQVLKGFATEIAGLPG--ITTVAVK 805
                :.|....|.:....: .|.||.:::....| |||.||.:   :.|::.|...  ...|.:|
 Frog    83 SLEELTLDQVLRTKDPSLQALEIPRGRIRQPLQLAGEGRFGPI---YRTKLNGPEDGKEKDVIIK 144

  Fly   806 MLKKGSNSVEYMALLSEFQLLQEVS-------HPNVIKLLGACTSSEAPLLIIEYARYGSLRSYL 863
            .|:....:.|    :.:|  ||.|:       |||:::|||.|.:.:...:::|....|||..:|
 Frog   145 RLRNSCGAQE----IRDF--LQRVAFQGWLGQHPNIVELLGCCPNEKPFCMVLENIEPGSLLHFL 203

  Fly   864 RLSRKIECAGVDFADGV-EPVNVKMVLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKI 927
            ...|:    .|...||: ..:....|.|.|.|:...:.:|.:.||.|.||||||:|:......|:
 Frog   204 WDCRR----DVMSMDGILYDLTECQVYTIALQVLSALGFLHQRKLFHGDLAARNILIHRNLTAKL 264

  Fly   928 SDFGLTRDVYEDDAYLKRSRDRVPVKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYPGI 992
            :..|...::.:...:  .||...|:||||||.|.....::||||||||:|.:|:|||||.|||.|
 Frog   265 TGLGGACEMRQTGTF--PSRRPAPLKWMAPERLLRLPISAKSDVWSFGILLYEMITLGAPPYPEI 327

  Fly   993 APQNLWSLLKTGYRMDRPENCSEAVYSIVRTCWADEPNGRPSFKFLASEFE--KLLGNNAKYIDL 1055
            .|.::...|:.|..|.||..|..|:|::::.||..:...|||...|....|  |...|:...:.:
 Frog   328 PPNDILQHLQRGNIMKRPPTCKPAMYNVMKICWLWKAPERPSLPELRKRLESAKKASNDKTVLQV 392

  Fly  1056 ETNAVSNPLYCG 1067
            ....|.. ||.|
 Frog   393 PEQVVPE-LYAG 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 PKc_like 770..1049 CDD:304357 95/291 (33%)
TyrKc 771..1042 CDD:197581 93/281 (33%)
styk1NP_001123790.1 PTKc 118..378 CDD:270623 92/274 (34%)
STYKc 118..377 CDD:214568 92/273 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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