DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ras and impdh1

DIOPT Version :9

Sequence 1:NP_001356940.1 Gene:ras / 43873 FlyBaseID:FBgn0003204 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_031753820.1 Gene:impdh1 / 550037 XenbaseID:XB-GENE-957448 Length:589 Species:Xenopus tropicalis


Alignment Length:545 Identity:359/545 - (65%)
Similarity:430/545 - (78%) Gaps:21/545 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 NGFVESTSSSAAPAIQTKSTTGFDAEL--------------QDGLSCKELFQNGEGLTYNDFLIL 60
            :|.:....::|.....|:...|::.|.              :|||:.:.||.|.:||||||||||
 Frog    49 SGHLHGHETAAQRYSATRLQAGYEPESMADYLISGGTGYVPEDGLTAQHLFANSDGLTYNDFLIL 113

  Fly    61 PGYIDFTAEEVDLSSPLTKSLTLRAPLVSSPMDTVTESEMAIAMALCGGIGIIHHNCTPEYQALE 125
            ||:|||||:||||:|.||:.:||:.||:||||||||||:|||||||.|||||||||||||:||.|
 Frog   114 PGFIDFTADEVDLTSALTRKITLKTPLISSPMDTVTESDMAIAMALMGGIGIIHHNCTPEFQANE 178

  Fly   126 VHKVKKYKHGFMRDPSVMSPTNTVGDVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDF-RE 189
            |.||||::.||:.||.|||..:|||||.||:.::||:|.||||.||:|.||:|:|||||||| .|
 Frog   179 VRKVKKFEQGFITDPVVMSLNHTVGDVFEAKNRHGFSGIPVTETGKMGSKLVGIVTSRDIDFLTE 243

  Fly   190 NQPEVLLADIMT--TELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMIARTDLKKARSY 252
            ......|:::||  .|||.||.|:.|..||.||::||||||||||.:.||||:||||||||.|.|
 Frog   244 KDYSTYLSEVMTKRDELVVAPAGVTLKEANEILQRSKKGKLPIVNDSDELVAIIARTDLKKNRDY 308

  Fly   253 PNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVIILDSSQGNSVYQVEMIKYIKETYPELQ 317
            |.||||..||||.|||||||.:||.||.||...||||::|||||||||||:.||.|||:.|||||
 Frog   309 PLASKDCRKQLLCGAAIGTREDDKYRLDLLTQAGVDVVVLDSSQGNSVYQINMIHYIKQKYPELQ 373

  Fly   318 VIGGNVVTRAQAKNLIDAGVDGLRVGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIA 382
            |:||||||.||||||||||||.||||||.|||||||||||||.||.||||:|:.|||:|||||||
 Frog   374 VVGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPVIA 438

  Fly   383 DGGIQSIGHIVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMERGDAKGA 447
            |||||::||:|||:|||||.||||||||.|:|||||||||||||||||||||||:|||    |..
 Frog   439 DGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAME----KNT 499

  Fly   448 AMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSCQDIGANSINKLRDMIYNGQLR 512
            :..:.|.:|.||:||||||||||.||||:.:::|||..|:||.||||||.|::.||.|:|:|:|:
 Frog   500 SSQKRYFSEGDKVKVAQGVSGSIQDKGSIHKFVPYLIAGIQHGCQDIGAKSLSILRSMMYSGELK 564

  Fly   513 FMKRTHSAQLEGNVHGLFSYEKRLF 537
            ..|||.|||:||.||||.||||||:
 Frog   565 LEKRTMSAQVEGGVHGLHSYEKRLY 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rasNP_001356940.1 PTZ00314 38..533 CDD:240355 349/497 (70%)
impdh1XP_031753820.1 PTZ00314 89..585 CDD:240355 349/499 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 668 1.000 Domainoid score I146
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68096
Inparanoid 1 1.050 699 1.000 Inparanoid score I658
OMA 1 1.010 - - QHG62889
OrthoDB 1 1.010 - - D281746at33208
OrthoFinder 1 1.000 - - FOG0001014
OrthoInspector 1 1.000 - - otm48426
Panther 1 1.100 - - O PTHR11911
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R605
SonicParanoid 1 1.000 - - X605
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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