DRSC/TRiP Functional Genomics Resources

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Protein Alignment amx and tm2d2

DIOPT Version :10

Sequence 1:NP_524644.1 Gene:amx / 43869 FlyBaseID:FBgn0000077 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_001011324.1 Gene:tm2d2 / 496785 XenbaseID:XB-GENE-964283 Length:198 Species:Xenopus tropicalis


Alignment Length:242 Identity:60/242 - (24%)
Similarity:88/242 - (36%) Gaps:82/242 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VPPLVSSMVAKSGGGAGGLLDNITAYSSSSSSSSSNGNNNM--------------LCPY------ 112
            |||:...::    ||.|.||......|.:.:|..:..:.|:              ||.|      
 Frog     5 VPPVGYLLL----GGQGLLLTFSLISSQNQTSPVTYPDLNLSAAPEPRDPLGPLVLCSYLPEEFV 65

  Fly   113 DKETPCDRLQFPCIRCNYNHGC------IYG--RDLNVTCEVINNVQCLGERSFQRQMNCRYCYQ 169
            :.:.|.|.:.....:....:||      .||  ....|.|..::.::|.|.|||.|         
 Frog    66 ECDDPVDHMGNGTAQQELRYGCKKFGGQAYGDVEHTQVMCRALDGIECDGPRSFLR--------- 121

  Fly   170 TEMWQQSCGQRSSCNSATDKLFRTNCTVHHDVLCLGNRSFTRNLRCNWTQGYRWSTALLISLTLG 234
                                               ||:.      |....|:.:.|.||.|..||
 Frog   122 -----------------------------------GNKP------CIKYTGHYFITTLLYSFFLG 145

  Fly   235 GFGADRFYLGHWQEGIGKLFSFGGLGVWTIIDVLLISMHYLGPADGS 281
            .||.|||.|||....:|||.:.||||:|..:|::|:....|.|:|.|
 Frog   146 CFGVDRFCLGHTGTAVGKLLTLGGLGIWWFVDLILLITGGLMPSDNS 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amxNP_524644.1 TM2 219..268 CDD:428337 24/48 (50%)
tm2d2NP_001011324.1 TM2 130..179 CDD:428337 24/48 (50%)

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