DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amx and tm2d3

DIOPT Version :9

Sequence 1:NP_001245591.1 Gene:amx / 43869 FlyBaseID:FBgn0000077 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_001092734.1 Gene:tm2d3 / 100093711 ZFINID:ZDB-GENE-070620-20 Length:203 Species:Danio rerio


Alignment Length:201 Identity:99/201 - (49%)
Similarity:124/201 - (61%) Gaps:11/201 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 AYSSSSSSSSSNGNNNMLCPYDKETPCDRLQFPCIRCNYNHGCIYGRDLNVTCEVINNVQCLGER 156
            |.::||:|.....|....||  ....|.:|...||.|..:|.|.|||..|.||.....|.|:.::
Zfish     6 ALTASSASPVVTDNYVSKCP--SGGLCSKLPADCIICALHHNCSYGRPHNYTCRPRAGVHCVSDQ 68

  Fly   157 SFQRQMN------CRYCYQTEMWQQSCGQRSSCN--SATDKLFRTNCTVHHDVLCLGNRSFTRNL 213
            . :||.|      ||:|:|.:..|..|...|.|.  |...:.:..:|.|...|.|||.|.|.:.|
Zfish    69 G-ERQQNFTLSLLCRFCFQLDASQYRCSNSSDCMTVSCPRRRYNASCEVLEHVHCLGKRVFQKRL 132

  Fly   214 RCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGIGKLFSFGGLGVWTIIDVLLISMHYLGPA 278
            .||||.||:|||||.:|:|||||||||||||.|:||:||||||||||:||:||||||.:.|:|||
Zfish   133 FCNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKLFSFGGLGIWTLIDVLLIGVGYVGPA 197

  Fly   279 DGSLYI 284
            ||||||
Zfish   198 DGSLYI 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amxNP_001245591.1 TM2 219..268 CDD:282945 38/48 (79%)
tm2d3NP_001092734.1 TM2 138..187 CDD:282945 38/48 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587264
Domainoid 1 1.000 92 1.000 Domainoid score I7615
eggNOG 1 0.900 - - E1_KOG4272
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12275
Inparanoid 1 1.050 196 1.000 Inparanoid score I3796
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1385397at2759
OrthoFinder 1 1.000 - - FOG0005547
OrthoInspector 1 1.000 - - oto39572
orthoMCL 1 0.900 - - OOG6_106920
Panther 1 1.100 - - LDO PTHR21016
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2847
SonicParanoid 1 1.000 - - X3965
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1514.830

Return to query results.
Submit another query.