DRSC/TRiP Functional Genomics Resources

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Protein Alignment amx and tm2d1

DIOPT Version :9

Sequence 1:NP_001245591.1 Gene:amx / 43869 FlyBaseID:FBgn0000077 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_001092733.1 Gene:tm2d1 / 100093710 ZFINID:ZDB-GENE-050208-580 Length:197 Species:Danio rerio


Alignment Length:136 Identity:43/136 - (31%)
Similarity:67/136 - (49%) Gaps:19/136 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 CYQTEMWQQSCGQRSSCNSAT-------DKLFRTNCTVHHDVLC-LGNRS----------FTRNL 213
            |.:..:.|..| :....:.||       |::....|....::.| |.|.:          |.:.:
Zfish    38 CDKLHLGQYLC-KEPRIDDATQEPETCKDRVAWVECLPAPNISCRLSNGTQFKFSGEEVGFNKTI 101

  Fly   214 RCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGIGKLFSFGGLGVWTIIDVLLISMHYLGPA 278
            .|....||.:..|:.:||.||..||||||||:...|:.|..:.|..|:.:::|.:||||..:||:
Zfish   102 PCRNVSGYSYKVAVALSLFLGWIGADRFYLGYPALGLLKFCTVGFCGIGSLVDFMLISMQIVGPS 166

  Fly   279 DGSLYI 284
            |||.||
Zfish   167 DGSDYI 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amxNP_001245591.1 TM2 219..268 CDD:282945 20/48 (42%)
tm2d1NP_001092733.1 TM2 107..155 CDD:282945 19/47 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4272
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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