DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RpL10 and Sil1

DIOPT Version :9

Sequence 1:NP_001262233.1 Gene:RpL10 / 43864 FlyBaseID:FBgn0024733 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_001347743.1 Gene:Sil1 / 81500 MGIID:1932040 Length:465 Species:Mus musculus


Alignment Length:91 Identity:19/91 - (20%)
Similarity:29/91 - (31%) Gaps:44/91 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 VHLVSD-----EYEQLSSEALE------------------AGRICCNKYLVKYCGKDQFHIRMRL 91
            :|..||     |.|:|.:|.||                  ||.                |:||.|
Mouse    47 IHQESDTKETREEEELDTEILEVFHPTQEWQTLQPGQAVPAGS----------------HVRMNL 95

  Fly    92 HPFHVIRINKMLSCAGADRLQTGMRG 117
            .    ..:|: :.....|:.|..::|
Mouse    96 Q----TGVNE-VKLQQEDKFQNNLKG 116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL10NP_001262233.1 PTZ00173 1..213 CDD:185498 19/91 (21%)
Sil1NP_001347743.1 Interaction with HSPA5 and localization to the endoplasmic reticulum. /evidence=ECO:0000269|PubMed:16116427 1..260 19/91 (21%)
Fes1 <196..226 CDD:312204
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0197
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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