DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and AT1G51580

DIOPT Version :10

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_175569.1 Gene:AT1G51580 / 841583 AraportID:AT1G51580 Length:621 Species:Arabidopsis thaliana


Alignment Length:507 Identity:100/507 - (19%)
Similarity:162/507 - (31%) Gaps:186/507 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EGEGPQDQKRNR---RNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPERT 73
            |..||    .||   ..|...|:|.|:...|::|||||..::.::.:..|::.|.|  ....||.
plant   262 EDVGP----FNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERI 322

  Fly    74 IQISA--DIE--------STLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRD 128
            |.|||  ::|        ..:.:...:::...|.......|||:|....|.::||||..|.|:|.
plant   323 IVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRR 387

  Fly   129 RIGCRFLKVFSNVAPQST------DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNF 187
            ..|.. ::||:.  .|:|      |.:||.:|....|.:|:.:::...|:....|.:        
plant   388 ATGAS-IRVFAK--DQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRL-------- 441

  Fly   188 DRVYADEYGGYGTGSGSTRPSQRGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRF 252
                               |.|                                           
plant   442 -------------------PFQ------------------------------------------- 444

  Fly   253 GGAAGGAVAGAGMGQRDNPFINPWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFGGGSFGN 317
                       |||....||:.|:                                |.....||.
plant   445 -----------GMGGPPPPFMGPY--------------------------------PEPPPPFGP 466

  Fly   318 NGFGGGPSDFGGNSGNFGQ----AQGTNSLPSLGSFSQNQGGTSSLPSLGSFGQNPGG--PGGLG 376
            ..:...|..:....|.|.:    ..|.:..|..| |.:.....|..|..|..| :|||  |..:.
plant   467 RQYPASPDRYHSPVGPFHERHCHGPGFDRPPGPG-FDRPPSPMSWTPQPGIDG-HPGGMVPPDVN 529

  Fly   377 NGLSGGANGGVGTLGGANGAGGFNAVGGANGGPNGSPN---AATNVPQGHDPNNSTQVTIPKELA 438
            :|.:                        ....|.||.|   .:.||          ::.||:...
plant   530 HGFA------------------------LRNEPIGSENPVMTSANV----------EIVIPQAYL 560

  Fly   439 GAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLL 490
            |.:.|:....:..|:..|.|.:.:.:|...:.:.::.:|||..|...||.||
plant   561 GHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLL 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 KH-I_HNRNPK_rpt1 28..91 CDD:411860 20/74 (27%)
KH-I_HNRNPK_rpt2 100..170 CDD:411861 23/75 (31%)
KH-I_HNRNPK_rpt3 426..498 CDD:411862 16/65 (25%)
AT1G51580NP_175569.1 KH-I 21..83 CDD:469614
KH-I_PEPPER_rpt2_like 149..221 CDD:411888
KH-I_PEPPER_rpt1_like 275..343 CDD:411887 20/67 (30%)
KH-I 361..433 CDD:469614 23/74 (31%)
KH-I 551..616 CDD:469614 17/72 (24%)
Blue background indicates that the domain is not in the aligned region.

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