DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HnRNP-K and AT1G14170

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_001117282.1 Gene:AT1G14170 / 837976 AraportID:AT1G14170 Length:479 Species:Arabidopsis thaliana


Alignment Length:560 Identity:114/560 - (20%)
Similarity:184/560 - (32%) Gaps:216/560 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KRLRMKREMNDEGEGPQDQKRNRRNEET-----------VRILIPSSIAGAVIGKGGQHIQKMRT 56
            ||..::.|....|    ..||...::||           .|.|.|....|::|||||:..:::|:
plant    11 KRSNLQSEFTGNG----GSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRS 71

  Fly    57 QYKATVSVDDS-QGPERTIQISADIESTLEIITEMLKYF-------------------------- 94
            :.|:.:.:::: .|.|..:       .|:....|.|.:|                          
plant    72 ETKSNMRINEALPGCEERV-------VTMYSTNEELNHFGDDGELVCPALDALFKVHDMVVADAD 129

  Fly    95 --EERDEDFD--------VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQ----- 144
              :..|:|.|        ||:|:.....|||||||||.|:.:|:....: ::|..:..|.     
plant   130 QDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQ-IRVIKDHLPACALTL 193

  Fly   145 STDRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVYADEYGGYGTGSGSTRPSQ 209
            |.|.::..:|:...|.||:.:|.:|..|          :|..|..:...     .:.|...:|  
plant   194 SHDELLLIIGEPLVVREALYQVASLLHD----------NPSRFQHLLLS-----SSSSSMHQP-- 241

  Fly   210 RGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQRDNPFIN 274
                      |.:...||       .....|..|..|..||    |....|.          ||.
plant   242 ----------GAMLMSAA-------LTSSHRNYAVRRDIAD----AREFCVC----------FIC 275

  Fly   275 PWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFGGGSFGNNGFGGGPSDFGGNSGNFGQAQG 339
            |..|.||  |.|.|      |||. |......|...                    ..|..:...
plant   276 PAENVGG--VIGKG------GGFI-NQIRQETGATI--------------------RVNTSETDD 311

  Fly   340 TNSLPSLGS--FSQNQGGTSSLPSLGSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGGFNAV 402
            .:.:..:.|  |.::|.     |::                                        
plant   312 DDCIIFISSKEFYEDQS-----PAV---------------------------------------- 331

  Fly   403 GGANGGPNGSPNAATNVPQ------GHDPNN---STQVTIPKELAGAIIGKGGGRIRRIRNESSA 458
                       |||..:.|      |.|.|:   ||::.:.....|.:|||||..|..:|:.:.|
plant   332 -----------NAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRA 385

  Fly   459 YITI----DEP-LPNSNDRIITISGTPKQIQMA--QYLLQ 491
            .|.|    |.| :...::.::.|:|:|.....|  |.:|:
plant   386 NIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILR 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 16/72 (22%)
PCBP_like_KH 103..167 CDD:239089 22/68 (32%)
AT1G14170NP_001117282.1 KH-I 43..118 CDD:412160 17/81 (21%)
KH-I 147..219 CDD:412160 23/72 (32%)
KH-I 274..333 CDD:412160 18/143 (13%)
KH-I 355..427 CDD:412160 21/71 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 42 1.000 Domainoid score I4773
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm1137
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.010

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