DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HnRNP-K and HEN4

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_001190612.1 Gene:HEN4 / 836560 AraportID:AT5G64390 Length:866 Species:Arabidopsis thaliana


Alignment Length:501 Identity:118/501 - (23%)
Similarity:189/501 - (37%) Gaps:138/501 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 NEETV-RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV----DDSQGPERTIQISA----DIES 82
            |::.| :||..:..||.|||.||:.::.:.::..|.::|    ||.:  ||.|.::|    :.:|
plant   449 NQDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCE--ERLIAVTASENPECQS 511

  Fly    83 T-------------LEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGC-- 132
            :             .|:.|..:.....| .....||::..|..|||:||||..:.|:|...|.  
plant   512 SPAQKAIMLIFSRLFELATNKILDNGPR-SSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAI 575

  Fly   133 RFLKVFSNVAPQ---STDRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHN-----YDPMNFDR 189
            :.|||..|  |:   ..|:|||..|:...|.||:..:.:..||:....::.|     ...:..:|
plant   576 QILKVEQN--PKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTER 638

  Fly   190 VYADEYGGYGTGSGSTRPSQRGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRF-G 253
            .|..:         |..|...|::::      |:..|.  |....:          |...|.| .
plant   639 FYDRQ---------SDNPLSIGSHQS------VSNPAT--NSSSLH----------RRSEDSFLS 676

  Fly   254 GAAGGAVAGAGMGQRDNPFINPWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFGGGSFGNN 318
            |:.........:|  .:|:|.|        .|.|.:....:.|::.|              ||..
plant   677 GSHSSVNYSRSVG--TDPYIRP--------EDPFPDRFNPSAGYSHN--------------FGRR 717

  Fly   319 GFGGGPSDFGGNSGNFGQAQGTNSLPSLGSFSQNQGGTSSLPSLGSFGQNPGGPGGLGNGLSGGA 383
                ...|...||.:..:|                      ||.......|..|.||.:     |
plant   718 ----FTMDHSDNSHHLTEA----------------------PSRLWASPPPAAPRGLSD-----A 751

  Fly   384 NGGVGTLGGANGAGGFNAVGGANGGPNGSPNAATNVPQGHD----PNNSTQVTIPKELAGAIIGK 444
            :||:.:              ...|...||.:|......||.    .|.:.::.:|......:.|:
plant   752 SGGLSS--------------ARAGHVLGSLHARLVFSSGHKSAIVTNTTVEIRVPANAMSFVYGE 802

  Fly   445 GGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLL 490
            .|..:.::|..|.|.:.|.||...::||||.|||||.|.|.||.||
plant   803 QGYNLEQLRQISGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLL 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 21/82 (26%)
PCBP_like_KH 103..167 CDD:239089 26/68 (38%)
HEN4NP_001190612.1 PCBP_like_KH 49..102 CDD:239089
PCBP_like_KH 151..218 CDD:239089
PCBP_like_KH 453..522 CDD:239089 19/70 (27%)
PCBP_like_KH 543..611 CDD:239089 26/69 (38%)
KH-I 786..849 CDD:238053 24/63 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 42 1.000 Domainoid score I4773
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 109 1.000 Inparanoid score I2078
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm1137
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X348
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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