DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and RCF3

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_200118.3 Gene:RCF3 / 835386 AraportID:AT5G53060 Length:652 Species:Arabidopsis thaliana


Alignment Length:646 Identity:134/646 - (20%)
Similarity:206/646 - (31%) Gaps:205/646 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 GEGPQDQKRNRRNEETV-----RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPER 72
            |.|..:.:.::.:.||:     |||...:.||.||||.|..|:.:|....|.::|.:  ....||
plant    49 GGGGGNGRPSKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAER 113

  Fly    73 TIQISAD------------------IESTLEIITEMLKYF------EERDEDFD----------V 103
            .|:||.:                  :.|..:.|.|....|      .|.:||:.          .
plant   114 IIEISDNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVT 178

  Fly   104 RLLIHQSLAGCVIGKGGQKIKEIR--DRIGCRFLKVFSNVAPQS---TDRVVQTVGKQSQVIEAV 163
            ||::.:...||::||||:.|:::|  .:...|.|...||: |:.   ::.:||.||:.:.|..|:
plant   179 RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNL-PRCVSLSEEIVQIVGELNAVKNAL 242

  Fly   164 REVITLTRDTPIKGAIHNYDPMNF-------DRVYA---DEYGGYGTGSGSTRPSQRGNNRNGGG 218
            ..|.:..|::      .:.|..||       :|.:|   |:|........|.| ..|||.||.  
plant   243 AIVSSRLRES------QHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQSSDR-FPRGNFRNN-- 298

  Fly   219 AGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRFGGAAGG---------------AVAGAGMGQR 268
                            |....:.|......|...|.....               .|.|...|  
plant   299 ----------------NFSSRQSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQG-- 345

  Fly   269 DNPFINPWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPF----------------------- 310
               .|:...|..|.||......||........|.......||                       
plant   346 ---IIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIIDLIPDKDN 407

  Fly   311 ---------GGGSFGNNGFGGGPSDFGGNSGNFGQAQGTNSLPSLGSFS--------QNQGGTSS 358
                     ...|....|..|..|:....:|...|......:|...|.:        :.:....:
plant   408 LITTRLLVPSRDSICLEGKAGSVSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREA 472

  Fly   359 LPSL---------GSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGGFNAVGGANG------G 408
            |..|         ....|....|            ....|.|...|..|...|..:|.      |
plant   473 LVELTLLLRSHMFKELSQKETPP------------ASTSTTGPLEGVAGVMEVASSNNTIQSREG 525

  Fly   409 PNGS----PNAATNVPQGHD-----------------------------PNNSTQVTIPKELAGA 440
            |..|    ...:|.:||..:                             ..::.:|.:|:.:...
plant   526 PTSSNLNLQQVSTILPQFKEGFGSVAKAGESEHREEVPVTTSRMAVPLVTRSTLEVVLPEAVVPK 590

  Fly   441 IIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLLQ---QSVHENG 498
            ::.|...::.:|...|.|.:||.|..|.....||.|||||:|.:.||.|||   .|:.|:|
plant   591 LVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILSIQEDG 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 23/85 (27%)
PCBP_like_KH 103..167 CDD:239089 21/68 (31%)
RCF3NP_200118.3 PCBP_like_KH 69..143 CDD:239089 20/73 (27%)
PCBP_like_KH 179..246 CDD:239089 21/67 (31%)
KH-I 326..395 CDD:320758 13/73 (18%)
KH-I 410..477 CDD:320758 9/66 (14%)
KH_1 578..641 CDD:306517 21/62 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 42 1.000 Domainoid score I4773
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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