DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and AT2G25970

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_180167.1 Gene:AT2G25970 / 817137 AraportID:AT2G25970 Length:632 Species:Arabidopsis thaliana


Alignment Length:507 Identity:117/507 - (23%)
Similarity:180/507 - (35%) Gaps:132/507 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVD-----DSQGPERTIQISA---DIESTLEI 86
            |.:|.||:...|.:|||||:.|:.::.|..|.:.|.     |.....||:.::.   .|....::
plant   135 TKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQL 199

  Fly    87 ITEMLKYFEERD------------------EDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCR 133
            ||::|:..|..:                  :.|.::  |..:..|.:|||||:.||.::.:.|.|
plant   200 ITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVMK--IPNNKVGLIIGKGGETIKSMQAKTGAR 262

  Fly   134 FLKVFSNVAP--QSTDRVVQTVGKQSQVIEA---VREVIT---------LTRDTPIKGAIHNYDP 184
            ...:..::.|  .:.:|.:|..|...|:..|   |.|:|:         :....|.:|......|
plant   263 IQVIPLHLPPGDPTPERTLQIDGITEQIEHAKQLVNEIISGENRMRNSAMGGGYPQQGGYQARPP 327

  Fly   185 MNFDRVYADE--------YGGYGTGSGSTRPSQRGNNRNGGGAGGVAGG------------AAGG 229
            .:    :|..        ||||........|.|.|.:..|......:.|            :|.|
plant   328 SS----WAPPGGPPAQPGYGGYMQPGAYPGPPQYGQSPYGSYPQQTSAGYYDQSSVPPSQQSAQG 388

  Fly   230 NGGGF--------NAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQRDNPFINPWANGGGGDVDG 286
            ....:        ::||:........|.:.:..|:|...||.|..|......|.....|.|...|
plant   389 EYDYYGQQQSQQPSSGGSSAPPTDTTGYNYYQHASGYGQAGQGYQQDGYGAYNASQQSGYGQAAG 453

  Fly   287 FGNNAGGAG----------------------GFAGNSFGGGAGGPFGGGSFGNNGFGGGPSDFGG 329
            : :..||.|                      |.||  :|.....|...||.|..|:|..|:...|
plant   454 Y-DQQGGYGSTTNPSQEEDASQAAPPSSAQSGQAG--YGTTGQQPPAQGSTGQAGYGAPPTSQAG 515

  Fly   330 ---------NSG-----------NFGQAQGTNSLPSLGSFSQNQG-------GTSSLPSLGSFGQ 367
                     |||           .:||:|.:...|  ||:....|       |....|:.| :||
plant   516 YSSQPAAAYNSGYGAPPPASKPPTYGQSQQSPGAP--GSYGSQSGYAQPAASGYGQPPAYG-YGQ 577

  Fly   368 NPGGPGGLGNGLSGGANGGV---GTLGGANGAGGFNAVGGANGGPNGSPNAA 416
            .|.|.|..|......|.||.   |:.|...|.||......:...|.|.|.|:
plant   578 APQGYGSYGGYTQPAAGGGYSSDGSAGATAGGGGGTPASQSAAPPAGPPKAS 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 20/68 (29%)
PCBP_like_KH 103..167 CDD:239089 19/68 (28%)
AT2G25970NP_180167.1 KH_1 137..202 CDD:365809 18/64 (28%)
KH_1 233..299 CDD:365809 18/67 (27%)
PRK07764 <421..598 CDD:236090 47/182 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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