DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and zgc:110045

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:XP_005156745.1 Gene:zgc:110045 / 664755 ZFINID:ZDB-GENE-050706-149 Length:436 Species:Danio rerio


Alignment Length:483 Identity:104/483 - (21%)
Similarity:157/483 - (32%) Gaps:202/483 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEMLKYF 94
            |:|:|:.....|::|||.|:.::|||.:..|.:::.|...|||.:.|:...|...:....:.:.|
Zfish    20 TIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSSPERIVTITGASEVIFKAFAMIAEKF 84

  Fly    95 EERDEDFDV-----------------RLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVA 142
            ||     |:                 ||:...|..|.:|||||.||||||:..|.: ::|..::.
Zfish    85 EE-----DILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQ-VQVAGDLL 143

  Fly   143 PQSTDRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVYADEYGGYGTGSGSTRP 207
            |.||:|.|...|....:.:.|:.:.|:..::|.|||...|.|                     :|
Zfish   144 PDSTERAVTISGTPHAITQCVKHICTVMLESPPKGATIPYRP---------------------KP 187

  Fly   208 SQRGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQRDNPF 272
            |.                     |||...                                   .
Zfish   188 SA---------------------GGGHTV-----------------------------------L 196

  Fly   273 INPWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFGGGSFGNNGFGGGPSDFGGNSGNFGQA 337
            ..|.|                |..||                                      .
Zfish   197 TQPHA----------------ATAFA--------------------------------------I 207

  Fly   338 QGTNSLPSLGSFSQNQGGTSSLPSLGSFGQ-NPGGPGGLGNGLSGGANGGVGTLGGANGAGGFNA 401
            .|..::|.......:|.....:| |.|.|| ||..|         |....:.|            
Zfish   208 PGQFAIPPQDLTKLHQLAMQHIP-LTSLGQSNPTFP---------GLEASIAT------------ 250

  Fly   402 VGGANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPL 466
                                     :|.:::||.:|.|.|||:.|.:|..||..|.|.|.|....
Zfish   251 -------------------------SSQELSIPNDLIGCIIGRQGSKINEIRQMSGAQIKIAGAT 290

  Fly   467 PNSNDRIITISGTPKQIQMAQYLLQQSV 494
            ..|..|.:||:|:|..|.:||||:..|:
Zfish   291 DGSAVRHVTITGSPANISVAQYLISASL 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 18/60 (30%)
PCBP_like_KH 103..167 CDD:239089 24/80 (30%)
zgc:110045XP_005156745.1 PCBP_like_KH 20..81 CDD:239089 18/60 (30%)
PCBP_like_KH 104..168 CDD:239089 24/64 (38%)
KH-I 252..314 CDD:238053 26/61 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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