DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and PCBP1

DIOPT Version :9

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_006187.2 Gene:PCBP1 / 5093 HGNCID:8647 Length:356 Species:Homo sapiens


Alignment Length:482 Identity:101/482 - (20%)
Similarity:162/482 - (33%) Gaps:174/482 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQGPERTIQISADIESTLEIITEMLKYF 94
            |:|:|:.....|::|||.|:.::::|.:..|.:::.:...|||.|.::.   .|..|........
Human    15 TIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTG---PTNAIFKAFAMII 76

  Fly    95 EERDEDFD---------------VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQ 144
            ::.:||.:               :||::..:..|.:|||||.||||||:..|.: ::|..::.|.
Human    77 DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ-VQVAGDMLPN 140

  Fly   145 STDRVVQTVGKQSQVIEAVREVITLTRDT----PIKGAIHN--YDPMNFDRVYADEYGGYGTGSG 203
            ||:|.:...|....|.|.|:::..:..:|    | :|.:..  |.||                  
Human   141 STERAITIAGVPQSVTECVKQICLVMLETLSQSP-QGRVMTIPYQPM------------------ 186

  Fly   204 STRPSQRGNNRNGGGAGGVAGGAAGGNGGGFNAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQR 268
                                              .|.......||.||...|||           
Human   187 ----------------------------------PASSPVICAGGQDRCSDAAG----------- 206

  Fly   269 DNPFINPWANGGGGDVDGFGNNAGGAGGFAGNSFGGGAGGPFGGGSFGNNGFGGGPSDFGGNSGN 333
                 .|.|.   .|::|                                               
Human   207 -----YPHAT---HDLEG----------------------------------------------- 216

  Fly   334 FGQAQGTNSLPSLGSFSQNQGGTSSLPSLGSFGQNPGGPGGLGNGLSGGANGGVGTLGGANGAGG 398
                      |.|.::|.....|.|...|....|            ..........:.|..|..|
Human   217 ----------PPLDAYSIQGQHTISPLDLAKLNQ------------VARQQSHFAMMHGGTGFAG 259

  Fly   399 FNAVGGANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITID 463
            .::......|...|.:|:|        ..:.::|||..|.|.|||:.|..|..||..|.|.|.|.
Human   260 IDSSSPEVKGYWASLDAST--------QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA 316

  Fly   464 EPLPNSNDRIITISGTPKQIQMAQYLL 490
            .|:..|:.|.:||:|:...|.:||||:
Human   317 NPVEGSSGRQVTITGSAASISLAQYLI 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 PCBP_like_KH 30..91 CDD:239089 16/60 (27%)
PCBP_like_KH 103..167 CDD:239089 24/63 (38%)
PCBP1NP_006187.2 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 16/69 (23%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 24/77 (31%)
KH-I_PCBP1_2_rpt3 276..351 CDD:411949 29/76 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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